Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1275 ATGGGCGTGGACTTCTACAAGATTCTTCAGGTAGATAGAAGCGCCAAAGATGAGGATCTCAAGAAAGCATATCGAAGGCTAGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAGAGAGGCTGAAGCTAAATTCAAGCAAATCTCTGAAGCTTATGATGTTTTGAGTGATCCACAGAAGCGAGGAGTGTATGATCAGTATGGTGAGGAGGGGCTGAATGGGGTGCCGATGGGCGCAGGTGGTTTTCCTGGTGGTGGCGGCGGCGGCAGCAGCGGTGACGGTGGAGCGACGTCATTCCGGTTCAACCCCAGAAGTGCAGATGATATATTTTCGGAGTTTTTCGGGTTTTCGAGACCCTTTGGTGGTGGAATGCCGGACATGGGTGGCCGAGCTGGTGGCTCTGGATTTTCCAGGGGTGGACCGTTTGGTGAGGATATCTTTGCTCAATTTAGAAGTGCAGCTGGGGAGGGCTCTGGACATATGCCAAGGAAAGGTGCAGCCATTGAGAGACCATTGCCTTGTAGCTTGGAGGATTTGTATAAAGGAACTACCAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGCCAGTGGGAGACCCTCCACAGTAGACGAAATCCTTACAATTGAGATAAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCGGAAAAGGGAAATGAGCAGAGAGGAGTTATCCCTTCAGACCTTGTCTTTATTATTGATGAGAAGCCTCATAGTCTCTTTAAAAGGGATGGCAATGATCTTGTTGTCACCCAGAAGATATCGCTTGTAGAAGCCTTGACGGGCTACACAGCGCAGCTGACAACCCTTGATGGGCGGAGTCTTACAATCCCCATTAACTCCACTATTAGTCCGACATATGAAGAAGTTGTCAAAGGAGAGGGTATGCCCATTCCGAAAGAACCTTCCAAGAAAGGGAACTTAAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTTACATCGGAACAGAAAAGTGGCATCAAGCGATTATTGACATCTCCCTAA 1041 0.4726 MGVDFYKILQVDRSAKDEDLKKAYRRLAMKWHPDKNPNNKREAEAKFKQISEAYDVLSDPQKRGVYDQYGEEGLNGVPMGAGGFPGGGGGGSSGDGGATSFRFNPRSADDIFSEFFGFSRPFGGGMPDMGGRAGGSGFSRGGPFGEDIFAQFRSAAGEGSGHMPRKGAAIERPLPCSLEDLYKGTTKKMKISRDVSDASGRPSTVDEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRSLTIPINSTISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1275 346 Gene3D - 168 247 - -
Gso7g1275 346 Gene3D - 249 329 - -
Gso7g1275 346 CDD DnaJ 4 59 IPR001623 -
Gso7g1275 346 CDD DnaJ_C 170 331 - -
Gso7g1275 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 171 249 IPR008971 GO:0006457|GO:0051082
Gso7g1275 346 Pfam DnaJ domain 4 67 IPR001623 -
Gso7g1275 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 337 IPR008971 GO:0006457|GO:0051082
Gso7g1275 346 Pfam DnaJ C terminal domain 170 328 IPR002939 -
Gso7g1275 346 Gene3D DnaJ domain 3 125 IPR036869 -
Gso7g1275 346 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gso7g1275 346 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gso7g1275 346 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gso7g1275 346 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gso7g1275 346 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 345 - -
Gso7g1275 346 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gso7g1275 346 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gso7g1275 346 SUPERFAMILY Chaperone J-domain 3 94 IPR036869 -
Gso7g1275 346 PANTHER BNAANNG28460D PROTEIN 1 345 - -
Gso7g1275 346 SMART dnaj_3 3 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1275 Gso-Chr7 18172003 18176360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1275 5 69 C2H2 Transcription Factor Family AT1G74250 36.232 1.24e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1275 K09510 - gmx:100781592 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1622 18 47844308 47848766 Gso7g1275 7 18172003 18176360 GST
Gso7g1275 7 18172003 18176360 Gso3g0467 3 8360521 8365462 PCT
Gso3g0467 3 8360521 8365462 Gso7g1275 7 18172003 18176360 PCT