Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1260 ATGGGGTTTGGTCTGAATAGGAGGACAAAGAGAAGAGAAGAACAAGGAGAAGGAAAGATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGATATCCAGTTTGCCAACACACTAGCTTCTGAGTATCCAAGTGGTGGTGCCTGCTTCCAATTGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTCCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAGCTTTAGGATTCATCAGAATTCTTATATACAAGGCATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAGAAAAGCCAGTCTAAGGGAGTTCTATGGCGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACCGATGTTGATGACAGGAAACAAAAACATCTATGTGCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAACCTTTCTGAAATTGACATGGAGAGGGAATTAGAGTGTGGTATTTGCTTGGAGATAAATAGCAAGGTTGTATTGCCCAACTGCAATCATTCAATGTGTATGAAATGCTATGAAGACTGGCATGCAAGATCTCAGTCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTGAACACTGATGATCTTTGGATCTACATTAGCAGCAGTGAGATTAATGACTTGGCTTCAATCAACAAGGAGAATTTCAAAAGATTATTTATGTACATAGAAAGTTTGCCTCTCACAGCCAGACCCTATATGCACCATGCCATATATCATCACCACTAG 777 0.4093 MGFGLNRRTKRREEQGEGKMRKSFKDSLKALEADIQFANTLASEYPSGGACFQLRLSYSPAAQFFLFLVQWTDCHLAGALGFIRILIYKAYEDGKTTMSIYERKASLREFYGVVFPSLLQLHRGITDVDDRKQKHLCATKYKLKDLTSKGNLSEIDMERELECGICLEINSKVVLPNCNHSMCMKCYEDWHARSQSCPFCRDSLKRVNTDDLWIYISSSEINDLASINKENFKRLFMYIESLPLTARPYMHHAIYHHH* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1260 258 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 11 257 - -
Gso7g1260 258 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
Gso7g1260 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 212 IPR013083 -
Gso7g1260 258 SMART ring_2 163 200 IPR001841 -
Gso7g1260 258 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Gso7g1260 258 MobiDBLite consensus disorder prediction 1 22 - -
Gso7g1260 258 PANTHER RING FINGER PROTEIN 41, 151 11 257 - -
Gso7g1260 258 SUPERFAMILY RING/U-box 153 206 - -
Gso7g1260 258 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1260 Gso-Chr7 17931738 17935250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1260 107 208 C3H Transcription Factor Family AT5G01960 28.704 1.55e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1260 K25840 - gmx:100818286 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1611 18 47617190 47620617 Gso7g1260 7 17931738 17935250 GST