Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1259 ATGGGGACAAGCAGTTTTCTATGGAACTGTACTAAAAAGTTTATCTCAGCCGGGATTGTCACTGTGACTGTGACTGATCTTTTTGTGACAGTTATTCCAGTTCGAGGTGGATCTATGTCTCCCACATTTAATCCTAAAGCCGGTTCTCTGATGGGAGGTGTTTTTGATGACTATGTTTTGGTTGAGAAATTTTGCCTTCATAGCTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGCTCCCCACAAAATCGCAAGGAGACACACGTAAAGAGAATAGCTGCATTACCTGGTGAATGGTTTGGCACTCATCAGAAGAATGATGTGATTCAGATTCCATTAGGACATTGTTGGGTTGAAGGAGACAACACAGCTTCTAGCCTGGATTCAAATTCATTTGGACCAATTCCTTTGGGCATAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAATACTCCACCACAGTTGGATCGACTACAGGAATAA 513 0.4327 MGTSSFLWNCTKKFISAGIVTVTVTDLFVTVIPVRGGSMSPTFNPKAGSLMGGVFDDYVLVEKFCLHSYKFSHGDVVVFRSPQNRKETHVKRIAALPGEWFGTHQKNDVIQIPLGHCWVEGDNTASSLDSNSFGPIPLGIIRGRVTHVVWPPQRIGAVKNTPPQLDRLQE* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1259 170 CDD S26_SPase_I 34 145 IPR019533 GO:0004252|GO:0006465
Gso7g1259 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso7g1259 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso7g1259 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso7g1259 170 Pfam Signal peptidase, peptidase S26 11 99 IPR019533 GO:0004252|GO:0006465
Gso7g1259 170 Pfam Signal peptidase, peptidase S26 105 150 IPR019533 GO:0004252|GO:0006465
Gso7g1259 170 Gene3D Umud Fragment, subunit A 24 165 - -
Gso7g1259 170 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 163 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Gso7g1259 170 TIGRFAM sigpep_I_bact: signal peptidase I 19 105 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso7g1259 170 SUPERFAMILY LexA/Signal peptidase 28 168 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1259 Gso-Chr7 17924232 17927634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1259 39 162 MADS-box Gene Family AT1G29960 36.154 1.28e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1259 K09648 - gmx:100499932 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1610 18 47611670 47615446 Gso7g1259 7 17924232 17927634 GST