Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1201 ATGTCCACTTTGCAGATGTCCCGTGTTGATTTGGAGCAAGGGAATGTGAATCATCGCCATTCGGTTGTTGGAAGTGATGTGAGTGGTGAAGGGAGCGTATGCTTCTCTGATGCTGATGATGGTTCTTGCTATTCCCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTCCTCATTCTGGGAGAGCTTCTTCTTCGGCTTCTGAGTGTTCTGTGGAGGCGGAAACTAGAAGTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGTCATGAGTCTGGTGCCCCCATTCAATTGGGATGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACATGTGAAATTTGCCATTCTGTTGCTCGGAATGTTTACGGAGGAAATGAGGAGTCGACGGAGCATTTGAGCGACGTTAACAATGCTACTACAGCAGCCACACTCTCCACACCTGCTCCTTCAGCAGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTCTTGCTTGCTTGTATGGTTTTTGCGTTTGTCATATCATGGCTATTCCACTTTAATGTGCCATCATCCTAG 699 0.4678 MSTLQMSRVDLEQGNVNHRHSVVGSDVSGEGSVCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEVGGVPHSGRASSSASECSVEAETRSGVPEIKVHLAKVEKDCRICHMGLESDSHESGAPIQLGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGNEESTEHLSDVNNATTAATLSTPAPSAEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1201 232 CDD RING_CH-C4HC3_MARCH 108 160 - -
Gso7g1201 232 ProSiteProfiles Zinc finger RING-CH-type profile. 100 166 IPR011016 GO:0008270
Gso7g1201 232 PANTHER OS01G0850200 PROTEIN 5 231 - -
Gso7g1201 232 PANTHER ZINC FINGER, RING-CH-TYPE 5 231 - -
Gso7g1201 232 Pfam RING-variant domain 108 159 IPR011016 GO:0008270
Gso7g1201 232 SMART ringv_2 107 160 IPR011016 GO:0008270
Gso7g1201 232 SUPERFAMILY RING/U-box 105 163 - -
Gso7g1201 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1201 Gso-Chr7 16889963 16894762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1201 79 232 C3H Transcription Factor Family AT5G05830 63.226 3.00e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1201 - - gmx:100808666 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1550 18 46235502 46238873 Gso7g1201 7 16889963 16894762 GST