Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1173 ATGGCTTCTGAAACTGTAAATCGAGTTGACTCTGTTGACGATATTGAGTTTATGGAAGATGAGGAAGAAGCCAGGGTTGAACCTAAACCAAATGCAAAGGAGAACAGAAGTGACAATGATGAAAAAGAGAGTAAAAAAGTTAAGGTTTGCACTTCTATAGCTTGGAAATATTTTACTAAAATTGGTGTGGTAGATGGTAAAGAAAAGGTAGAATGTAATACATGTGGGCAACAATATGTAATTGGTGGGAGTAAAGTAGGCACTTCACATTTATTGCGTCATGTTAAGCTCTTGTGTAAAAAGAAAGCTAAATTTCATGATGTGGGTGGAATGATAATTGATCATGCTGGAAAGTTAAGATCTAGGGAAGTTGACCAAAAGCGTGTTCTTGAGCTTCTAACAATGTGTATTGTTCGACATGTTCAAGATGGATTAAAAGTGGATGAAGTTGCTTTACAAAAAATTAGAGACAACATTAAATATGTGAGAGCATCAGAGTCAAGAAAAATAGTATTTACCGAATGTATTGCTCAAGTGAGAGGTATTGATACTAAAGTGGGCTTGAGGTTGGATGTGCCTACTTGGTGGAATTCTACTTATATCATGCTTGAGAGTGCTCTTAGGTATCGTCGTGCTTTTGCAAGTTTCACTATTCGTGATAGAAAATACAAATGTTGTCCATCTAATGAGGAATGGAAAAGAGCTGAAAAATTGTGTGAATTTTTGAAGCCATTTTATAAGATTACTAATTTGATTTCAGGTACATCTTATCCAACTTCCAATGAATACTTCATGCAAGTATGGAAAATTGAATGGTTGTTGCGAGAAACACTTAAGTGTGATGATCCAGTATTGCAAAATATGGCAGTGTTGGTGATGGAAAAGTTTGGCAAGTATTGGAGTGACTATAATGTCATTATTTCAATTGCTATGATTCTTGACCCACGGATGAAGCTTGAAGCACTTCGGTTTTACTATTCAAAGCTTGATGCTTCTACTTGTGATGAAAAGATTAATAACATAAAAGAGAATATGTACAAGCTCTTTGATGAATATGTGAGTGTAAAGTCAAGTTCATCTACTACATCAAGTTCTCAACAACCTACTGTTGAAGAAGATTTCAATGTAGAAGAAAATCAAGAGATGGATGATCCATATAATAAATATATCAATTATGTGAGCCAAAATGTTAATGTCAATGGCAAGTTTGAATTAGATCTCTATTTGGCTAAGACACCGCTTGAGTCAAAGTTTTTTCCTAAGTTGGATATTTTGAGTTATTGGAAGGACCGCCAAGAACATTATCCAAATCTTTGTAGATTGGCATGTGAGGTGTTAAGCATTCCTATAATAACTGTTGCTAGTGAATCGGCATCTAGCATTGGTGCTCGTGTGCTAAACAAATTTGTTTCTCAACTAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCTATAGCAAGAATGGAAAGAGCTTAGGATCCATGAACATGGATGAATTCCTTTCTAGCATTTGGAACTCTGATGATAACAACCAAGTTAACCCACCATAA 1560 0.3532 MASETVNRVDSVDDIEFMEDEEEARVEPKPNAKENRSDNDEKESKKVKVCTSIAWKYFTKIGVVDGKEKVECNTCGQQYVIGGSKVGTSHLLRHVKLLCKKKAKFHDVGGMIIDHAGKLRSREVDQKRVLELLTMCIVRHVQDGLKVDEVALQKIRDNIKYVRASESRKIVFTECIAQVRGIDTKVGLRLDVPTWWNSTYIMLESALRYRRAFASFTIRDRKYKCCPSNEEWKRAEKLCEFLKPFYKITNLISGTSYPTSNEYFMQVWKIEWLLRETLKCDDPVLQNMAVLVMEKFGKYWSDYNVIISIAMILDPRMKLEALRFYYSKLDASTCDEKINNIKENMYKLFDEYVSVKSSSSTTSSSQQPTVEEDFNVEENQEMDDPYNKYINYVSQNVNVNGKFELDLYLAKTPLESKFFPKLDILSYWKDRQEHYPNLCRLACEVLSIPIITVASESASSIGARVLNKFVSQLSKQNSILSLTLDEFYSKNGKSLGSMNMDEFLSSIWNSDDNNQVNPP* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1173 519 Pfam BED zinc finger 54 96 IPR003656 GO:0003677
Gso7g1173 519 MobiDBLite consensus disorder prediction 22 43 - -
Gso7g1173 519 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 137 475 - -
Gso7g1173 519 SUPERFAMILY Ribonuclease H-like 143 474 IPR012337 -
Gso7g1173 519 SUPERFAMILY beta-beta-alpha zinc fingers 52 102 IPR036236 -
Gso7g1173 519 SMART bed5 49 102 - -
Gso7g1173 519 PANTHER BED FINGER-RELATED 137 475 IPR045259 -
Gso7g1173 519 MobiDBLite consensus disorder prediction 1 43 - -
Gso7g1173 519 Pfam hAT family C-terminal dimerisation region 404 477 IPR008906 GO:0046983
Gso7g1173 519 Pfam Domain of unknown function (DUF4413) 253 352 IPR025525 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1173 Gso-Chr7 16440481 16445154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1173 466 514 bZIP Transcription Factor Family AT3G44460 51.923 1.58e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1173 - - gsj:114420423 1035.4