Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1154 ATGTCTTATTGGAATTTCCCCTTCACTTTGCAAAGAAAGATGGAGTTCAATTCCCAAAACCCTAACCAATCTGAGATAAGATGGAGCTCAGATGATCAGGCTGGTCCTGGACAAGTAAAATATTCTTGTTCCTTTTGCCAAAGAGGGTTCTCAAATGCACAGGCCCTAGGAGGCCACATGAATATCCATAGAAGAGATAGGGCTAAACTCAAACAATCTGCTGAGGAAAAGTTGCTTTCTTTGGACATCTCAATCAAAACCACTGGCGATCCAAATGACCCTTCTGATTTGGAAGAGAAATTTTTGTTTCGGCTGGGTGCTGGTGAAGAGAAGCAAGCAAGAAACCATAAATATCCATTCAGTTTTCCTCACAAAGATGATCATCATGGTCATGTTCCACAAATTCCCCATCTGCCTTCTTTTGAGGAGAAGACAGCTGAATTAGACCTCGAGCTGAGGTTAGGGCTTCATCCTCAGGAGTCAGCAACATTGAACACTAGATCGTTCTTTTGA 513 0.423 MSYWNFPFTLQRKMEFNSQNPNQSEIRWSSDDQAGPGQVKYSCSFCQRGFSNAQALGGHMNIHRRDRAKLKQSAEEKLLSLDISIKTTGDPNDPSDLEEKFLFRLGAGEEKQARNHKYPFSFPHKDDHHGHVPQIPHLPSFEEKTAELDLELRLGLHPQESATLNTRSFF* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1154 170 PANTHER OS07G0101800 PROTEIN 79 160 - -
Gso7g1154 170 PANTHER OS07G0101800 PROTEIN 2 75 - -
Gso7g1154 170 SUPERFAMILY beta-beta-alpha zinc fingers 38 67 IPR036236 -
Gso7g1154 170 Gene3D Classic Zinc Finger 16 91 - -
Gso7g1154 170 SMART c2h2final6 41 63 IPR013087 -
Gso7g1154 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gso7g1154 170 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 79 160 - -
Gso7g1154 170 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 2 75 - -
Gso7g1154 170 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1154 Gso-Chr7 16072615 16075690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1154 28 163 C2H2 Transcription Factor Family AT3G53820 38.971 2.15e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso7g1154 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1154 - - gmx:100101897 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1501 18 44375305 44376401 Gso7g1154 7 16072615 16075690 GST