Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1148 ATGTCGTTGAACTGTGGTGGCTGCGGTGGAGAAGAAGATGAGCTCTATGAGCAACTATGGAAGGCGTGCGCAGGACCCCATGTGGAAGTTCCACGTACAGGCCAAAGGGTCTTCTATTTTCCTCAGGGTCACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAACCAACGGATTCCACTGTTCAAGCTTTCCTCCAAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTGCCGGAATCTAATCAAACTGAGCCTACGAGCCCCGATCCATGCCCTGCTGAACTTCCAAGGCCAAGAGTTCACTCCTTCTGTAAGGTCTTAACTGCCTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAGCATGCCACTGAATGCCTTCCAGCATTGGACATGTCTAAATCAACACCAACTCAGGAATTGGTTGCCAAGGATCTCCAGGGCTTTGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAACAATGGAGAATTGCGGGTTGGAGTGAGGCGTATTGCTCCTCTGCAGAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTCATTGTTAGTGTGAACAAGTATTTAGAGGCTATCAACCAAAAATGTAATGTTGGTATGAGATTCAAGATGAGGTTTGAAGGGGATGAATCCCCTGAAAATGACAAAAGATTTTCGGGCACAATACTTGGAGTAGAGGATATTTCCCCTCACTGGGTGAATTCAAATTGGCGATCTCTTAAGGTTCAATGGGATGAACCTGCATCTTTTCCAAGACCTGATAGAGTTTCATCATGGGAGATAGAACACATTCTGGCTTGTGTTCCTACTACGTCATCTCAACCTGCTGTTATAAAGAATAAAAGGCCTCGACAAGCAAGTGAAGTTCCGGATCTTGGAGACACACCATTAGCTGCACCTACTTTCTGGGATGCTGGACTTACACAGTGTGATATGACACAACTTAGGGTCATGACCGAAAGCAAAAGGAGTGACAGCAGTTCCCACATGAGGCATCATAACAGTAAAAGCAACAACAATGGTATATCAATGAATCAGACAGAAGCAAGTTGGCTATCTTCTCCTCAATTATATCAGGACACAACCGATGATAACAAGAGCATCTTAGCTTGGCCTATTTCGAAACCTCACTCAGAAAGATTGAACAATGATCATTTCCTTGACCAGGTTGACAAGAACATCAACAAAGTAGAGGCTGCTACAAGCTATAGATTGTTTGGGATTGACCTTATTGATCATGCAAGGAACAACTCTCTTTCTGTAGAGAATGCGTCTGGAGTCGCCTCTGAGTGCAAAACTGATGTAAACCACGAGTCTGATCTCTCAAAGGCTTCTAAAGAATGGAACCAAGAACAACTACTAGTATCTCCAAAAGAGACTCAAAGCAAACAAGTTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCGGTCGGTCGTGCTGTGGATTTGACCACATTGGATGGATATGATCAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAACTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGCAATATGGTGAAAAGAATCTTCATTTGTTCAAGCCAGGATGTGCACAAATTGAGCTCAGGGAGCAAACTACCTATCTCTTCTATGGGAGAGATTGTAATAAGCTTAAACACAACCGAGACCTGA 1995 0.4391 MSLNCGGCGGEEDELYEQLWKACAGPHVEVPRTGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLSSKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSPDPCPAELPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLQGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRIAPLQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRFKMRFEGDESPENDKRFSGTILGVEDISPHWVNSNWRSLKVQWDEPASFPRPDRVSSWEIEHILACVPTTSSQPAVIKNKRPRQASEVPDLGDTPLAAPTFWDAGLTQCDMTQLRVMTESKRSDSSSHMRHHNSKSNNNGISMNQTEASWLSSPQLYQDTTDDNKSILAWPISKPHSERLNNDHFLDQVDKNINKVEAATSYRLFGIDLIDHARNNSLSVENASGVASECKTDVNHESDLSKASKEWNQEQLLVSPKETQSKQVCSRSCTKVQMQGVAVGRAVDLTTLDGYDQLVDELEKMFDIKGQLQHRNKWETVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVHKLSSGSKLPISSMGEIVISLNTTET* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1148 664 Pfam AUX/IAA family 477 590 IPR033389 -
Gso7g1148 664 Pfam AUX/IAA family 597 641 IPR033389 -
Gso7g1148 664 SUPERFAMILY DNA-binding pseudobarrel domain 111 249 IPR015300 -
Gso7g1148 664 MobiDBLite consensus disorder prediction 407 429 - -
Gso7g1148 664 Pfam Auxin response factor 246 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso7g1148 664 ProSiteProfiles PB1 domain profile. 554 635 IPR000270 GO:0005515
Gso7g1148 664 Gene3D - 281 354 - -
Gso7g1148 664 CDD B3_DNA 118 220 IPR003340 GO:0003677
Gso7g1148 664 Gene3D - 117 221 IPR015300 -
Gso7g1148 664 SUPERFAMILY CAD & PB1 domains 557 630 - -
Gso7g1148 664 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Gso7g1148 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso7g1148 664 Pfam B3 DNA binding domain 120 220 IPR003340 GO:0003677
Gso7g1148 664 SMART B3_2 120 222 IPR003340 GO:0003677
Gso7g1148 664 Gene3D - 550 642 - -
Gso7g1148 664 PANTHER AUXIN RESPONSE FACTOR 9 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1148 Gso-Chr7 15996088 16001664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1148 9 647 B3 DNA Binding Superfamily AT4G23980 57.645 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso7g1148 AUX_IAA 1.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1148 K14486 - gmx:100799088 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1494 18 44139606 44146163 Gso7g1148 7 15996088 16001664 GST