Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1146 ATGGCATCACTGGGATCTCCGTCTTCTTTCTGGTGCTACCGCTGCAACCGCATAGTTAGGGTTCCACAAAACCACGCCGTTCTCCTCTGCCCCGATTGCAACTCCGGCTTCCTCGAAGAGCTCCAAACCCCTCCCCACTCGCGCCGATCCACGCGCGGCGGCGGTGGGTCCCCCTTCAACCCGGTAATCGTCCTGCGCAACGCAAACGACGTCGTCTCGCCCGAAACGCGGAACTTCGAACTCTACTACAACGACGCCGTTTCAGGTTCCTCCGGCCCAAGCAGTCTCCGTCCTTTACCACAGGGAGTATCCGAGTTCCTCATGGGCTCCGGCTTCGACAATGTACTCGACCAGCTCGACGCCGCCGCGGGGGGCGCCGGAGCACTGCCCCCCACGGCAGCGTCGAAAGCGGCGATCGAGTCGATGCCGGTGGTTAAGATCCTCGCGAGCCACACCTACGCGGAATCGCACTGCGCGGTCTGCATGGAGAATTTCGAGATCAACTGCGACGCACGTGAGATGCCGTGCGGTCACGTGTACCATTCCGAGTGCATCGTGCCGTGGCTCTCGGTGAGAAACTCGTGCCCCGTGTGCCGCCACGAGGTTCCTTCGGATGAAGTTGAAGAAAGTAATAACAATACTGTGGGGTTGACTATTTGGAGACTTCCTGGGGGAGGATTCGCTGTGGGCAGGTTCATCGGAGGGAGGGAGCTCCCACTGGTGTATACGGAGATGGACGGCGGGTTTAACGGCGCTAACGGCGTTCCAAGGAGAGTCGCTTGGGATAGCTCCGTTGGGAGGTCTAGGGAGAATAGAGGCTTCGGTGCTGCTTTCAGGAATGTTTTTTCGTATATCGGGAGGGTTAGGAGCTCGTTTTCTCGCCGAACGAGAAATTCGCGTGCCAACGGAAGATCTCGTTCTTAA 924 0.5877 MASLGSPSSFWCYRCNRIVRVPQNHAVLLCPDCNSGFLEELQTPPHSRRSTRGGGGSPFNPVIVLRNANDVVSPETRNFELYYNDAVSGSSGPSSLRPLPQGVSEFLMGSGFDNVLDQLDAAAGGAGALPPTAASKAAIESMPVVKILASHTYAESHCAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSDEVEESNNNTVGLTIWRLPGGGFAVGRFIGGRELPLVYTEMDGGFNGANGVPRRVAWDSSVGRSRENRGFGAAFRNVFSYIGRVRSSFSRRTRNSRANGRSRS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1146 307 Pfam Protein of unknown function (DUF1117) 215 302 IPR010543 -
Gso7g1146 307 ProSiteProfiles Zinc finger RING-type profile. 158 199 IPR001841 -
Gso7g1146 307 Pfam zinc-ribbon 9 41 IPR039525 GO:0061630
Gso7g1146 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 270 - -
Gso7g1146 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RDUF2 8 270 - -
Gso7g1146 307 SUPERFAMILY RING/U-box 138 205 - -
Gso7g1146 307 Pfam Ring finger domain 157 199 IPR001841 -
Gso7g1146 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 205 IPR013083 -
Gso7g1146 307 SMART ring_2 158 198 IPR001841 -
Gso7g1146 307 CDD RING-H2_PA-TM-RING 157 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1146 Gso-Chr7 15961778 15963505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1146 98 215 C3H Transcription Factor Family AT5G01980 39.167 1.14e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1146 - K11982 gmx:100798563 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1490 18 44053462 44055165 Gso7g1146 7 15961778 15963505 GST