Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1113 ATGAAGACGACGCAGCAGCCTGAAGCTCCTCAAGGCGATCCCTGTGAAGAGAAGAAGAAGAGCATAAACCCTGAGCTATGGCAAGCTTGTGCAGGGCCTTTGGTTAACCTTCCTCCCTCCGGCACCCACGTCATCTACTTCCCTCAAGGTCACAGCGAACAGGTTGCTGCTTCTCTCAACAAAGATCCCCACTCTCAAATCCCCAACTATCCCAATCTACCTTCCAAGCTTCTCTGTCTCCTCCACAATCTCACTTTGCTTGCTGATCCCGAAACTGATGAAGTCTACGCTCAGATCACTCTTCAGCCAGTCCCTTCTTTTGACAAGGATGCTCTCTTGCGATCTGATCTCGCCCTCAAGTCCTCCAAGCCACAACCCGACTTCTTCTGCAAACAACTCACCGCCAGCGATACTAGCACTCACGGTGGTTTCTCCGTCCCTCGCCGTGCCGCCGATAAGATTTTCCCTCCTCTCGATTATTCTATGCAACCTCCTGCTCAAGAACTCGTCGCCAGGGATTTGCACGACACCGTTTGGACATTCCGCCACATTTACCGTGGACAACCAAAACGTCATTTGCTTACCACTGGATGGAGTCTATTTGTTAGTGGAAAGAGGCTCTTGGCCGGAGACTCTGTTTTGTTTATTAGAGATGAAAAGCAGCATCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCGTCATCAGTGTTGTCAAGTGATAGCATGCACATTGGAATTCTTGCTGCAGCGGCTCATGCAGCTGCAAATAATAGCCCCTTCACCGTCTTTTATAATCCTAGGACTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCAGTGTATAGCCACCAGCCATCACTTGGCATGCGTTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCTGTGCGATGGAAAAACTCTCAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACCGCTGGGGAAAAGCGTAGCAGGGTCTCACTCTGGGAAATTGAACCGGTGACTGCTCCATTTTTCATCTGTCCACCTCCATTCTTTAGATCCAAGAGACCAAGACAACCTGGAATGCCTGATGATGAATTGTCTGATTTTGATAACATTTTCAAGCGGACAATGCCCTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGCCTTAGCCTAGCTCAATGGATGAACATGCAGCAAAATCCTGCACTGGCTAACTCACTTCAGCCAAATTATGCACCTTCCTTATCTGGATCTATTTTGCAAAATATTCCTGGAGCTGATATTTCTCGCCAGCTGGGATTTTCTGCTCCACAAATTTCTCAGTCAGACAATGTAGCCTTAAATACTCAGAGGCTTCTTCAGACTGCTCAACAATTGGATCACCTTCAGAAGCTACCATCTACTTCTAGCACATTGGGAACAGTCCTGCTGCCACAGCAACAGTTGGGTGATATCACTCAACAACCGAGGCAGAACTTGGCAAATCAAACTATCCCTCAGGGTCAAGTTCAGTCCCAACTCTTGCATCCCCAGAACATGGTCCAAACCAACAATATTCTTCAGCAGCAGCAACCATCCATTCAAAACCATCAACTACATAGAAGCCTCTCTCAGAACCCATCACAGCAGCAGACAACTATTGGTCAGAATCAACCGCAAAATTTGATCCAGTCCCCTATGCCTGATCATGTTCAACAATTACAGATGTCTGACAATCAGATTCAGTTGCAGTTGTTACAGAAGCTTCAACAACAAAAACAAACGCTATTGGCTCAACAAACTGCATTGCAGCAGCCTACTCAACTTACTCAAATCCAGGATCAGCAAAGACAGCTTTTAGATAAAACACATAACTTGTCTAGAGCACTAACACCTGGTCAAGTACTGGAAATTCCTCATATTATTCAGAATTCACTGCCCGAGGCTAATTCTATCTCAAATCAGATGACAAAGGCCAATTGCCAGAGCAATATTCAATTCTCTCAGCAGCCCAAGCTTCAGCAGCAGCAACAACCTGGCATGGTTTCTGAAATGCCTGGCCACATGGCACTTCTCCCTACTGCTACAACTAACCAACTTTCTGCTGGTGGCAGTAGTATAGTGACTGGAGCAGGTGGTGCAGGGCAGTCTGTAATTACAGATGATGTTCCATCTCGCTCCACCTCACCTTCTACAAATAACTGTACCAATGCACTTCCACAATTGATAAATTCACGATTCCCGAGAAGCACAATGGTAGGGGATGACATGGCGCACTCTGCTGCCACAATCTTGAGTTCAAGTGCCTTGGAAACTTCGTCATCAAATGCAAACATGTTAAAAGATTTACAGCCAAAGTTTGAAGTTAAGCCATCTCTGAATATTTCCAAAATTCAGAATCAAGGCCATTTTGCTCCACATACGTACTTGAATGGTAATGCTGCTCATACAGATTGTTTGGACACATCATCTTCTACAACGTCAGTTTGCCTTTCTCAGAGTGACGCTCATATGAATCAGAATAGCAATCCATTGTCTTACAATCGACAGTCTATGTTGTTTAGAGACAATAATCAAGATGGGGAAGTTCAGGCAGATGCTAGGAGCAATATTCCTTATGCCAATAACATTGATAGCCAAATAGGAATGCCACTGAATCCAGATTCACTCTTAACCAAAGGCACATTAAGGTTGGGGAAGTATTTGTCTAATAATTTCTCTTCAGAAGGCATGCTTGGAAATTATGAAAATAACAGAGATGCTCAGCAAGAACTTTCGTCTTCAATGGTTTCACAGACATTTGGTGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAACTTCTTGAACAGTGGTCCGTGGGCTCCACCACCAGCACCGCCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGGACATATACCAAGGTATATAAACGCGGAGCTGTGGGAAGGTCCATAGACATAACACGATATTCAGGTTATGAGGAGCTTAAAAAGGATCTAGCTCGTAGGTTTGGCATAGAGGGACAGCTGGAGGATCGGCAAAGGATAGGTTGGAAACTTGTCTATGTAGATCATGAGAGTGATGTTCTTCTAGTGGGAGATGATCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAGCAGATGAGCTTGGACGGAGATTTTGGCAATGGTGGCCTTCAAAATCAAGCCTGTAGCAGCTCTGACGGTGGCAATACTTAA 3333 0.4515 MKTTQQPEAPQGDPCEEKKKSINPELWQACAGPLVNLPPSGTHVIYFPQGHSEQVAASLNKDPHSQIPNYPNLPSKLLCLLHNLTLLADPETDEVYAQITLQPVPSFDKDALLRSDLALKSSKPQPDFFCKQLTASDTSTHGGFSVPRRAADKIFPPLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQHLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRTSPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSLWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDELSDFDNIFKRTMPWLGDDMCMKDPQGLPGLSLAQWMNMQQNPALANSLQPNYAPSLSGSILQNIPGADISRQLGFSAPQISQSDNVALNTQRLLQTAQQLDHLQKLPSTSSTLGTVLLPQQQLGDITQQPRQNLANQTIPQGQVQSQLLHPQNMVQTNNILQQQQPSIQNHQLHRSLSQNPSQQQTTIGQNQPQNLIQSPMPDHVQQLQMSDNQIQLQLLQKLQQQKQTLLAQQTALQQPTQLTQIQDQQRQLLDKTHNLSRALTPGQVLEIPHIIQNSLPEANSISNQMTKANCQSNIQFSQQPKLQQQQQPGMVSEMPGHMALLPTATTNQLSAGGSSIVTGAGGAGQSVITDDVPSRSTSPSTNNCTNALPQLINSRFPRSTMVGDDMAHSAATILSSSALETSSSNANMLKDLQPKFEVKPSLNISKIQNQGHFAPHTYLNGNAAHTDCLDTSSSTTSVCLSQSDAHMNQNSNPLSYNRQSMLFRDNNQDGEVQADARSNIPYANNIDSQIGMPLNPDSLLTKGTLRLGKYLSNNFSSEGMLGNYENNRDAQQELSSSMVSQTFGVPDMAFNSIDSTIDDSNFLNSGPWAPPPAPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKKDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLQNQACSSSDGGNT* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1113 1110 SMART B3_2 129 231 IPR003340 GO:0003677
Gso7g1113 1110 Coils Coil 600 620 - -
Gso7g1113 1110 PANTHER AUXIN RESPONSE FACTOR 12 1105 - -
Gso7g1113 1110 Gene3D - 127 230 IPR015300 -
Gso7g1113 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 1105 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso7g1113 1110 CDD B3_DNA 128 229 IPR003340 GO:0003677
Gso7g1113 1110 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso7g1113 1110 Pfam AUX/IAA family 997 1083 IPR033389 -
Gso7g1113 1110 MobiDBLite consensus disorder prediction 552 585 - -
Gso7g1113 1110 MobiDBLite consensus disorder prediction 741 758 - -
Gso7g1113 1110 SUPERFAMILY DNA-binding pseudobarrel domain 118 258 IPR015300 -
Gso7g1113 1110 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Gso7g1113 1110 MobiDBLite consensus disorder prediction 733 758 - -
Gso7g1113 1110 Gene3D - 993 1087 - -
Gso7g1113 1110 SUPERFAMILY CAD & PB1 domains 1011 1076 - -
Gso7g1113 1110 ProSiteProfiles PB1 domain profile. 998 1082 IPR000270 GO:0005515
Gso7g1113 1110 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Gso7g1113 1110 Gene3D - 293 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1113 Gso-Chr7 15500471 15506260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1113 16 472 B3 DNA Binding Superfamily AT1G19220 71.739 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso7g1113 B3 2.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1113 - - gmx:100790644 2091.62