Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1083 ATGGGAAGGGCTCCATGTTGTGACAAATCCAACGTGAAAAGAGGGCCTTGGTCTCCTGATGAAGATGCCACCCTCAAAAACTACCTTGAGAAACATGGCACAGGTGGTAACTGGATAGCTCTCCCCAAAAAAGCAGGCCTTAAGCGTTGTGGGAAGAGCTGTCGTCTAAGATGGCTGAACTATCTCAGGCCTCATATTAAGCTTGGAGGTTTTACGGAAGAGGAAGACAATATTATCTGCACCCTTTATGACATCATCGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTGCCAGGGAGAACAGACAATGATGTGAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTCTTGGCAGGAAACACTAGTAGTAGTATTGCCACCACAAGCAACAATATTGTCACTTTCAGCAATACTAGTTATTCTCATCAAGTTGAGGGCCTTGTCTTGGATCAAAAACTGAACCCAGCTAATTGGTTTGACTCCTACGATGTTAATTTCGAATTGGAACAAACACCAATTCCAGTTCCTTTTCCAATGCCTCAGGAATTAGAAGCTTTTAATTATACTGGGAGCATAAGTTGTAGTACTGCACCACCACCCTATAAGGAAGTTTCATTAATGCTTTCCAATGCAGACAAACATACACTATGGTTTGGTTATGACCAAGCAAGTGAAGATGATCCAAATTTGCTTGAGTTTGTGCTTGATGATCTGCATCAGATGAATCAAGGATTTGTTTTTCAAGACAAAAGCAGCCAAGTTGGTCCACCATCTGGCTAA 783 0.4227 MGRAPCCDKSNVKRGPWSPDEDATLKNYLEKHGTGGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDNIICTLYDIIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAGNTSSSIATTSNNIVTFSNTSYSHQVEGLVLDQKLNPANWFDSYDVNFELEQTPIPVPFPMPQELEAFNYTGSISCSTAPPPYKEVSLMLSNADKHTLWFGYDQASEDDPNLLEFVLDDLHQMNQGFVFQDKSSQVGPPSG* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1083 260 CDD SANT 71 113 IPR001005 -
Gso7g1083 260 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gso7g1083 260 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso7g1083 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso7g1083 260 CDD SANT 16 62 IPR001005 -
Gso7g1083 260 Gene3D - 6 68 - -
Gso7g1083 260 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso7g1083 260 SMART sant 13 64 IPR001005 -
Gso7g1083 260 SMART sant 67 115 IPR001005 -
Gso7g1083 260 Gene3D - 70 136 - -
Gso7g1083 260 PANTHER OS09G0431300 PROTEIN 1 132 - -
Gso7g1083 260 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso7g1083 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso7g1083 260 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso7g1083 260 PANTHER OS09G0431300 PROTEIN 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1083 Gso-Chr7 15236809 15238575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1083 1 118 MYB Transcription Factor Family AT5G65790 81.356 4.18e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso7g1083 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1083 K09422 - gmx:100779092 548.125