Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1082 ATGATGCTCGGAGAGCACCATCGCGCGAATCCAACGGTTCACGTGCCACCGTGGCCAACCCACGACGATCCAACGGCCGAGATGTACTCCGCGTTTTTAACAAACGACGTCAATGCTGGTGAGTACTCTCCGTACTATCTTCAAGAAGCACTAACGGCTCTGCAGCGTTTTCTGCCGTCTAACGAAACGGACGCTGACTCGGACACGGAGGCTCAACCCGACGCGGCGGTGGACGCGTACTCGTGCGACCATTTCCGCATGTACGAGTTCAAGGTCCGTCGATGCGCACGTGGCAGGTCACACGACTGGACGGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGACGCCGGGACCCGAGAAAGTTCCACTACTCCGGCGCGGCGTGCCCGGAGTTTCGCAAGGGAAACTGCAAGAAAGGCGACACGTGCGAGTTCGCGCACGGCGTTTTCGAGTGCTGGCTCCACCCGGCGCGCTATCGGACTCAGCCTTGCAAGGACGGCACGAGTTGCCGGCGGCGGGTGTGCTTCTTCGCGCACACGCCGGAGCAGCTGCGCGTCTTGCCGATGCAGAGTCCGCGTAGCGCGGCGAACTCGTCTGAGTCCTACGACGGTTCGCCGATGAGACAGATGATGTCTCCGGCGGCGTTCATGTCCTCTCCGGCGGCTTCTCTCTCTCCTCCGGAGTCTCCGCCGGTGTCGCCGTCGATCAACGAGATGGTGGCTTCTCTGCGGAATCTGCAGCTCGGGAAAATGAAATCGATGCCTCAAAGTAGAAACGTTTCGGTCGGATCACCGGGTTACGGTTCGCCGAGAGGATCGGTGCTCCGACCCGGGTTTTGCAGTCTTCCAACAACGCCCACTCAGCAACCGGTTCGGTCAGGGGTGAACTGTTTCGATTTTTGGGATCAGAGTTGTGAGGAGGAACCAGTTATGGAGAGGGTGGAGTCAGGGAGGGGTATAAGGGCTAAGATGTTTGAGAAGCTGAGCAAGGAGAATTCTTTGGAAGGGTCGGGTACGGGTTCGGGTCAAGGAAGTGGTGCTCCGGATGTTGGGTGGGTCTCGGAGCTGGTTAACTGA 1080 0.5954 MMLGEHHRANPTVHVPPWPTHDDPTAEMYSAFLTNDVNAGEYSPYYLQEALTALQRFLPSNETDADSDTEAQPDAAVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRKGNCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPMQSPRSAANSSESYDGSPMRQMMSPAAFMSSPAASLSPPESPPVSPSINEMVASLRNLQLGKMKSMPQSRNVSVGSPGYGSPRGSVLRPGFCSLPTTPTQQPVRSGVNCFDFWDQSCEEEPVMERVESGRGIRAKMFEKLSKENSLEGSGTGSGQGSGAPDVGWVSELVN* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1082 359 PANTHER UNKEMPT FAMILY MEMBER 7 359 IPR045234 -
Gso7g1082 359 MobiDBLite consensus disorder prediction 331 359 - -
Gso7g1082 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Gso7g1082 359 Coils Coil 357 359 - -
Gso7g1082 359 MobiDBLite consensus disorder prediction 191 207 - -
Gso7g1082 359 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Gso7g1082 359 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Gso7g1082 359 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Gso7g1082 359 Gene3D - 120 195 - -
Gso7g1082 359 MobiDBLite consensus disorder prediction 191 211 - -
Gso7g1082 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1082 Gso-Chr7 15212840 15214390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1082 73 261 C2H2 Transcription Factor Family AT5G12850 48.598 2.13e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso7g1082 zf-CCCH 4.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1082 - - gmx:100778184 708.753