Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1080 ATGATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCTTGCCCGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTAACAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGAATTTGTTATACCCATCCAGAGAAGCTTCCAGGAGTAACAAGAGATGGGTTGAGCAAGCACTTCTTCCATAGACCTTCAAAAGCTTACACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTAGTCCTCTACACCAACTTTGGAAAGAACAGAAAGCCCGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGGCAGCACGAGGAAGAGAAAGAAGGAGAGCTAGTGGTGTCAAAGATATTCTACCAGACACAACCAAGGCAGTGCAACTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAACAGTACTGGTAGAAGGGACAGTGGAAGCGGAAGCTGTTCTTCTAAGGAAATTGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGTGTCCCTCCAATGACAGGTTTCACTACTCATCATCCTTTGGATATTCAACAGCTAAAACCTGATCACTTTAGCTTCATCCCTTTCAGGAAAACCTTTGATGAGGTTGGAATAGGAGAGGCTTCCACAGCAAGAGAAGTAGTGCAAGCATCAGGTTCATGTGAAGAAGTGCATGAACGGCAGCGAGCACAACATGTAGCTCATCATCAACAACAACAACATGCTCATCATCATCAAATTTCAAATTCAGCTTTTCATATCAGTAGGCCATCACATCCCATCTCTACCATTATCTCTCCCCCTCCCCTCCACCACACTTCCATCATTCTCGATGACAACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAACGAAAACTTCCAGCAACAACATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTAATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCGTCCATCACAAATCCACAAGAAGCTGAATGGTTGAAGTATTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1344 0.4501 MMSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELTEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNNSTGRRDSGSGSCSSKEIVTHRDEMSAVVGVPPMTGFTTHHPLDIQQLKPDHFSFIPFRKTFDEVGIGEASTAREVVQASGSCEEVHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNNSYHVSRIMLQNENFQQQHHKLGGRSASGLEELIMGCTSTEIKEESSITNPQEAEWLKYSYWPDPDNPDHHG* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1080 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 428 IPR044799 GO:0003700
Gso7g1080 447 SUPERFAMILY NAC domain 44 209 IPR036093 GO:0003677|GO:0006355
Gso7g1080 447 ProSiteProfiles NAC domain profile. 48 209 IPR003441 GO:0003677|GO:0006355
Gso7g1080 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 5 428 - -
Gso7g1080 447 MobiDBLite consensus disorder prediction 216 254 - -
Gso7g1080 447 Pfam No apical meristem (NAM) protein 49 190 IPR003441 GO:0003677|GO:0006355
Gso7g1080 447 Gene3D NAC domain 57 213 IPR036093 GO:0003677|GO:0006355
Gso7g1080 447 MobiDBLite consensus disorder prediction 216 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1080 Gso-Chr7 15123519 15129523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1080 12 444 NAC Transcription Factor Family AT5G56620 53.813 5.90e-138 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso7g1080 NAM 9.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1080 - - gmx:100791884 853.973