LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso7g1048	ATGGCTTCTACTTGTTCTTATGTAGTTGGTTGTGCTTCTTCTTCCTCTCTCTCTGTTACCAAAAAATATGATGCTTTCATCACCTTTAGAGGAGATGATACTCGCAGCGACTTCGCAAGCCATCTTCATGCTGCTCTGCGCAGAAACAACGTCGATACATACATAGACTACAGGATCGAGAAAGGAGCTAAGATTTGGCTAGAAATCGAGAGAGCCATCAAAGACTCCACTCTCTTCTTGGTTATCTTCTCCGAGAACTACGCATCTTCTAGCTGGTGCTTGAATGAACTCCTCCAACTAATGCAATGCAAGAAACAAGAAGAAAACGTTCATGTTATTCCCGTGTTCTACAAAATAGACCCGTCTCAGGTACGCAAACAGAGCGAGAACTATCACGTGGCATTTGCAAAACACAAGAAGGATGGAAAGGTGAGTGAAGAGAAGATGCAAAAGTGGAAGGACGCTCTCAGTGAAGCAGCCAATTTATCTGGCTTCCATTCTAACACATACAGGACTGAACCTGACTTGATTGAAGACATTATCAAAGTTGTTTTGCAAAAACTAGATCACAAGTACCCAAATGACTTTAGAGGCCCTTTCATATCTAACGAGAACTATACAAACATTGAATCTTTTCTGAATATTAATTCAAAGGAAGTTAGAATCATTGGAATTTGGGGCATGGGAGGTATTGGTAAAACAACTCTTGCTGCTGCTATTTTTCATAAGGTTTCTTCTCATTATGAAGGCACTTGCTTCTTAGAAAATGTGGCTGAGGAATCGAAAAGGCATGACCTAAACTATGTATGCAACAAACTTCTTTCTCAGTTACTAAGGGAAGATCTTCATATTGACACTCTTAAAGTGATACCTTCTATTGTTACAAGAAAACTCAAGCGCAAGAAAGTTTTTATCGTGCTAGATGATGTGAACACTTCCGAACTTCTTGAAAAATTGGTCGGAGTTGGTCGTGAATGGCTAGGATCTGGTAGCAGAATCATTGTGACAACCAGAGATAAGCATGTACTTATACGTGAAGTTGTTGACAAAATTCATGAAGTCAAGAAAATGAACTTTCAAAACTCCCTTGAACTTTTCAGCCTAAACGCCTTTGGCAAAACCTATCCTGAAAAGGGATATGAGGAGTTATCAAAAAGAGCAATGGATTACGCCAAAGGAATCCCTTTAGCTTTGAAAGTTTTGGGATCATTTCTTCGTTCCAGAAGTGAAAATGAATGGCATAGTGCACTGAGTAAATTAAAGAAAAGTCCCAATGTGAAAATTCAGGCTGTGTTGAGATTGAGTTATGCAGGATTAGATGATGATGAGAAAAACATTTTTCTAGACATAGCTTGTTTTCTTAAAGGACAAAGCAGAGACCATGTAACAAAAATATTAAATGACTGCGATTTTTCTGCTGATATAGGGATAAGAAGTCTTTTAGACAAAGCTCTTATCACTACTACATATAGCAATTGCATAGATATGCACGATCTGATACAAGAAATGGGTAGAGAAGTTGTTCGTGAAGAATCTGTTAAATTTCCAGGGCAACGCAGTAGATTGTGGGATCCTGTGGAAATCTATGATGTATTGACAAATAATAGAGGAACTGCTGCAGTTGAAGGAATATGGTTAGATATGACTCAAATTACACATATAAATTTAAGCTCCAAAGTATTCAGAAAGATGCCAAACCTGAGATTACTCACTTTCAAATCTCACAATGGAGACTCTGAGAGAATTAATTCAGTGTACCTTCCAAAGGGTCTTGAATTCTTACCTAAAAACTTGAGATATTTGGGGTGGAATGGATATCCATTGGAATCCTTACCGTCAAGATTTTTCCCTGAGAAGCTTGTTGAGCTTTCCATGCCATACAGCAATGTGGAAAAACTTTGGCAAGGAGTACAAAATTTGCCAAATTTAGAGAGAATTGAACTTTGTGGCTCCAAGCACCTTGTGGAGTGTCCAAGGTTGTCTCATGCACCAAATCTTAAATATGTAAGTATGCGCGATTGTGAAAGCTTGCCTCATGTTGATCCATCAATTTTCTCCCTCCCGAAGCTTGAAATTTTAAATTTGAGCGGATGCACATCGCTTGAGAGCCTTAGCAGCAACACTTGGCCACAATCTCTCCAAGTATTGTTTTTAGCACATTCAGTCCAATCATGCAACATCGGATGCTATGGAAGTATTGGATGTGAATGCTACTTGGAAACCAGCTGGGATGAAAGGATCAAAATACCAAGTTTCTTTGTAGAAGAAAATATCTTGTCTAGTCTTGATCCTCAATTTGGATTTATGGCAGATCACATATTTTTATGGTATGATGCACAATGTTGTAAGCAGATAATGGAAGTAATTAAAGAAAGGAAAGCCATTAATGACAAGAGCACCACTCATCCTCCAAAGCTTACATTTAAATTCTTTGCTCAAACTGAAGATAACAATGAAGCAGTGGTCATAAAAGAGTGTGGGTTTCGTTGGATGTTTTCCTTAGAAGAAAGAGAATGTAAATTCAAGAGAAGCAGAGAAATTCATGAAGTAGAAGCCAATGTTTTCAGAAATCAAGTCAAGGACTCTGAGTCTAATGAGCAAGAAGAAACATTTCCTCCAACCAAAAAAATTAAGCAAGGTGTCTTCAGAACTTCAAACTTGGAAGCAGAAGAAAAAGAGGACTTGAGACGTCTTCTTGAAGAACTCCGGCTATAA	2715	0.3827	MASTCSYVVGCASSSSLSVTKKYDAFITFRGDDTRSDFASHLHAALRRNNVDTYIDYRIEKGAKIWLEIERAIKDSTLFLVIFSENYASSSWCLNELLQLMQCKKQEENVHVIPVFYKIDPSQVRKQSENYHVAFAKHKKDGKVSEEKMQKWKDALSEAANLSGFHSNTYRTEPDLIEDIIKVVLQKLDHKYPNDFRGPFISNENYTNIESFLNINSKEVRIIGIWGMGGIGKTTLAAAIFHKVSSHYEGTCFLENVAEESKRHDLNYVCNKLLSQLLREDLHIDTLKVIPSIVTRKLKRKKVFIVLDDVNTSELLEKLVGVGREWLGSGSRIIVTTRDKHVLIREVVDKIHEVKKMNFQNSLELFSLNAFGKTYPEKGYEELSKRAMDYAKGIPLALKVLGSFLRSRSENEWHSALSKLKKSPNVKIQAVLRLSYAGLDDDEKNIFLDIACFLKGQSRDHVTKILNDCDFSADIGIRSLLDKALITTTYSNCIDMHDLIQEMGREVVREESVKFPGQRSRLWDPVEIYDVLTNNRGTAAVEGIWLDMTQITHINLSSKVFRKMPNLRLLTFKSHNGDSERINSVYLPKGLEFLPKNLRYLGWNGYPLESLPSRFFPEKLVELSMPYSNVEKLWQGVQNLPNLERIELCGSKHLVECPRLSHAPNLKYVSMRDCESLPHVDPSIFSLPKLEILNLSGCTSLESLSSNTWPQSLQVLFLAHSVQSCNIGCYGSIGCECYLETSWDERIKIPSFFVEENILSSLDPQFGFMADHIFLWYDAQCCKQIMEVIKERKAINDKSTTHPPKLTFKFFAQTEDNNEAVVIKECGFRWMFSLEERECKFKRSREIHEVEANVFRNQVKDSESNEQEETFPPTKKIKQGVFRTSNLEAEEKEDLRRLLEELRL*	905

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso7g1048	904	PRINTS	Disease resistance protein signature	222	237	-	-
	Gso7g1048	904	PRINTS	Disease resistance protein signature	297	311	-	-
	Gso7g1048	904	PRINTS	Disease resistance protein signature	391	405	-	-
	Gso7g1048	904	PRINTS	Disease resistance protein signature	685	701	-	-
	Gso7g1048	904	Gene3D	-	19	185	IPR035897	-
	Gso7g1048	904	Pfam	Leucine Rich Repeat	619	638	IPR011713	-
	Gso7g1048	904	SUPERFAMILY	L domain-like	496	728	-	-
	Gso7g1048	904	SMART	till_3	22	162	IPR000157	GO:0007165
	Gso7g1048	904	Gene3D	Ribonuclease Inhibitor	531	725	IPR032675	-
	Gso7g1048	904	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	15	718	-	-
	Gso7g1048	904	ProSiteProfiles	TIR domain profile.	21	188	IPR000157	GO:0007165
	Gso7g1048	904	Gene3D	-	186	351	IPR027417	-
	Gso7g1048	904	Gene3D	-	357	440	IPR042197	-
	Gso7g1048	904	Pfam	NB-ARC domain	217	426	IPR002182	GO:0043531
	Gso7g1048	904	Pfam	TIR domain	22	194	IPR000157	GO:0007165
	Gso7g1048	904	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	718	IPR044974	GO:0006952
	Gso7g1048	904	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	450	IPR027417	-
	Gso7g1048	904	Coils	Coil	892	904	-	-
	Gso7g1048	904	SUPERFAMILY	Toll/Interleukin receptor TIR domain	13	165	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso7g1048	Gso-Chr7	14553632	14560303	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso7g1048	17	719	WRKY Transcription Factor Family	AT4G12020	35.344	5.50e-115	385

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso7g1048	-		-	gmx:100805490	1444.1