Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1027 ATGGCTTCTCCGCCACCCTTATCGCTAAACGTCGTCGGATCAGACATTGACCCAAACACTAACACGTTCCCCACCGTTACAAGTTCGTTAACGCCGCCATCACCACGCCGTTCATCTCCGTTACAGAACCTCAGCCCCAGCATTCTGATTATCGTCACGGTCCTCGCCGTCACCGTCATCGTTTCCCTCGCTCTCTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGCTTCTCCTCCTCCTCTGCCGCTCCCTCCGCCGCCGCGACGCCGATTTTCGCCTCCAGCCGCCGCATCTCGCCGGAGATACTCCACTCCTCCGCCTCCGCCTCCGCCTCCGTGATCGACACGCTCCCGCTCTTCACGTTCTCCTCCGTCACGCGCCGCTCCGCCGCCGTCTCCGGCGACTGCGCCGTGTGCCTCTCGAAGTTCCACCACCACGACCTCCTCCGTCTCCTCCCGCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACGTGGCTCCAGTCGAACCTCTCGTGCCCGCTCTGCCGCTCCACCATAGTCGCGGACGATTCCGACCTCGCTAAGATCCTCCGGCCGCCGTCATCCGCCGGTAGCAGCGATAGCTTCCGCCTCGAGTTAGGAAACATCAGCCGCCGCGGAACCGACGGCGCCGCCGAAGGCGGCTCCGTGGCGCGTGGCGGTTCGCGGTCCTATTCCATTGGATCGTTCGAGTATTTGATCGACGACGAATCGGAGGTTCCGTTCAGCCACGCTCGCCGGAGGAGCGTCGATGATGCGAAGGAGTTTCCGGCCCCGGCGGAGGCTCCGGTGAGTCACAACGAGGCGAGTCTCGCCGGAGAAGTTGGCGGCGTTAGAAGCTGGCTTAAGGAGTACATGGATAGGGTTTCCGTTTCTATTTCATCTCGAACGGCGTCGTTTCGAGGCTCTGGAAGGTTCTTCAGCGGTGGCGGGAGCAGTGATCGCCGAAGCGACATCGTTCCGGTCGCTGCTCCGGAGTACGACGCTGAAGGGAACCGAATTGGCGAAGAGATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1080 0.625 MASPPPLSLNVVGSDIDPNTNTFPTVTSSLTPPSPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAAPSAAATPIFASSRRISPEILHSSASASASVIDTLPLFTFSSVTRRSAAVSGDCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSTIVADDSDLAKILRPPSSAGSSDSFRLELGNISRRGTDGAAEGGSVARGGSRSYSIGSFEYLIDDESEVPFSHARRRSVDDAKEFPAPAEAPVSHNEASLAGEVGGVRSWLKEYMDRVSVSISSRTASFRGSGRFFSGGGSSDRRSDIVPVAAPEYDAEGNRIGEEISEMFRWLSGV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1027 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 16 326 - -
Gso7g1027 359 SMART ring_2 139 180 IPR001841 -
Gso7g1027 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 16 326 - -
Gso7g1027 359 SUPERFAMILY RING/U-box 128 187 - -
Gso7g1027 359 Pfam Ring finger domain 138 181 IPR001841 -
Gso7g1027 359 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Gso7g1027 359 MobiDBLite consensus disorder prediction 22 41 - -
Gso7g1027 359 CDD mRING-H2-C3H2C2D_ZSWM2 139 181 - -
Gso7g1027 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1027 Gso-Chr7 13863544 13865119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1027 28 188 C3H Transcription Factor Family AT4G28890 35.294 3.67e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1027 K10663 - gmx:100817751 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1027 7 13863544 13865119 Gso7g1027 7 13863544 13865119 ECH
Gso7g1027 7 13863544 13865119 Gso3g0878 3 31704360 31705932 GST