Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1015 ATGCCACCGAAAACGGCGAAGCGAGGGTCTGCGTCGAGCTTCTCGAAGAGGGGCGGCAGAGGCGGCAGGGGAACCCTGAAGGCTTCACAGAACCAACAGCAACACGAACCTGCGGAAGAGACCGTGAAGGTCGAAGAGAAACAACAACCCGTTGTTGTTGTTGTTGCTGAGGAGGAACAGCACACAGTGGTGGTGGAAGAAGAGAACCCTGCTGTTGAAGAGAAACGGCTTGTGGTTGAAGAGAAAGAATCTGTAGTGGTTGTTGAGGACAAGGCTATTGACATGAACCAAATGGCTCCTGAGGCTGTGGAAGAAGCGTCCCATGCGGCTAATGGGTTGAGCGTGGCGAAAAACGATGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGCTTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAACTTGAACAAGATGAGGGTCATGAGGTGGGAAATGAAGTAGAAGAAGAAGTGGCTGAAGATAATGTAGGTGAAGAGGGTGATACAGGTGAGGAAGAAGTCGAAGATGTTCACGATGAACTTGAGGGTGAAGAGGAGCATGAGCATGAGCATGAGCATCCAGACTTTGCTGATGTTGAGGAAGAGGAACACCGAGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTTTTTGTTGGGGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTGGTTACAGAGGTCAGGTTGATGATGAACCCTCAAACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTCAAAAATCCCGTGATTAATGGCAAACAATGTGGTGTCACTCCTAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAGGCTTTAAAAGAGAAGTTGAAACATTATGGAGTCACCAATGTTGAGGATTTAACTTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGATTTGCGTTTTTGGAATTTCCCTCTCGTTCTGAAGCTATGGATGCCTTTAAGCGACTGCAGAGGAGGGATGTTGTATTTGGAGTTGATAAGCTTGCAAAAGTTTCTTTTGCAGATTCCTTTATTGATCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTCAGGAAATATGGTGAGATTGAAAAGATTGAGCTTGCCAGAAACATGCCAGCTGCTCGTAGGAAGGACTATGGGTTTGTTACATTTGGCACACATGATGCTGCCGTTAAATGTGCTGATAGTATTACAGGAACAGAGTTGGGTGAGGGACACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCTAGACCACTCCAAAGAGGCCGCGGAAAACACAGTAGTCGTGGGGACTATCGTTCTAGTCGGGGATCTGGAATGATGACGAGGCCTTCATGGGGCCGACCTGCACCTCATTCTTTTCCTTCTCGTAGTGTAAGAGGAGTTGGAAGCCGTACTCCTCCTGTCAGATCAGTTAGTGTGAGAGATAGACGTCCTATGATGTCCATACCAGCAAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATATACCACCTCCCAGAAGTAGAGTTGCTGTAGATTATGGCTCAAGGGTGGCTTCTGTAAGGCGACCATCTTACAGGGATTATCCTGCCCGTGGTCCTGGCTACACCGAGCTCCCTAGAAGCACATCTCGTGCTGCACCAAGGAGAGGCTATGTGGATGATGGGTATGGCCAAAGATTTGAAAGGGCTCCTCCTCCACCTCCTCCACCCCATCTAAGTTACCGTGAAGGACGTCCTCGAGATTATGATGCTCTGTCTGGCTCAAAACGTCCTTATGCTGCTATAGATGATCTTCCTCCACGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGTCTAGACTATGACTATGGTGATAGTGCTTCGCAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTGTGGGATATGGTGGTGGCAGCAGAAGTTCTATTTCTAGTCAAGATTCACATGGGATGTATAGCAGTCGGCAGGGCATGAGTTATGGAGGAGGTTCTTTTGGTAGTGGTGATGTTGGTGGCATGTATTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCAGTGTATTCTGGAAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGTGGTTCAGGATCTTATTATTGA 2460 0.4667 MPPKTAKRGSASSFSKRGGRGGRGTLKASQNQQQHEPAEETVKVEEKQQPVVVVVAEEEQHTVVVEEENPAVEEKRLVVEEKESVVVVEDKAIDMNQMAPEAVEEASHAANGLSVAKNDEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKELEQDEGHEVGNEVEEEVAEDNVGEEGDTGEEEVEDVHDELEGEEEHEHEHEHPDFADVEEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKLAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGHKKAKVRARLSRPLQRGRGKHSSRGDYRSSRGSGMMTRPSWGRPAPHSFPSRSVRGVGSRTPPVRSVSVRDRRPMMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRDYGRREDIPPPRSRVAVDYGSRVASVRRPSYRDYPARGPGYTELPRSTSRAAPRRGYVDDGYGQRFERAPPPPPPPHLSYREGRPRDYDALSGSKRPYAAIDDLPPRYADTGARQSRARLDYDYGDSASQYGDAYGDRLGRSSVGYGGGSRSSISSQDSHGMYSSRQGMSYGGGSFGSGDVGGMYSSSYGGDYISRGSDVGGSSYSSVYSGRGVGGGSSYMGGGGSGSYY* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1015 819 MobiDBLite consensus disorder prediction 1 47 - -
Gso7g1015 819 Gene3D - 316 398 IPR012677 -
Gso7g1015 819 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 494 IPR000504 GO:0003723
Gso7g1015 819 PANTHER RNA RECOGNITION MOTIF 1 819 - -
Gso7g1015 819 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 399 IPR000504 GO:0003723
Gso7g1015 819 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 819 - -
Gso7g1015 819 CDD RRM_SF 317 384 - -
Gso7g1015 819 CDD RRM_SF 414 488 - -
Gso7g1015 819 MobiDBLite consensus disorder prediction 202 222 - -
Gso7g1015 819 MobiDBLite consensus disorder prediction 132 201 - -
Gso7g1015 819 MobiDBLite consensus disorder prediction 790 819 - -
Gso7g1015 819 MobiDBLite consensus disorder prediction 587 601 - -
Gso7g1015 819 SUPERFAMILY RNA-binding domain, RBD 407 515 IPR035979 GO:0003676
Gso7g1015 819 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 382 IPR000504 GO:0003723
Gso7g1015 819 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 479 IPR000504 GO:0003723
Gso7g1015 819 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 305 IPR000504 GO:0003723
Gso7g1015 819 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Gso7g1015 819 MobiDBLite consensus disorder prediction 735 755 - -
Gso7g1015 819 Gene3D - 153 315 IPR012677 -
Gso7g1015 819 MobiDBLite consensus disorder prediction 115 131 - -
Gso7g1015 819 MobiDBLite consensus disorder prediction 734 755 - -
Gso7g1015 819 Coils Coil 113 136 - -
Gso7g1015 819 Gene3D - 402 520 IPR012677 -
Gso7g1015 819 SUPERFAMILY RNA-binding domain, RBD 236 381 IPR035979 GO:0003676
Gso7g1015 819 MobiDBLite consensus disorder prediction 479 704 - -
Gso7g1015 819 SMART rrm1_1 316 395 IPR000504 GO:0003723
Gso7g1015 819 SMART rrm1_1 236 309 IPR000504 GO:0003723
Gso7g1015 819 SMART rrm1_1 413 488 IPR000504 GO:0003723
Gso7g1015 819 MobiDBLite consensus disorder prediction 105 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1015 Gso-Chr7 13616336 13623167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1015 237 479 Eukaryotic Initiation Factors Gene Family AT3G16380 25.483 8.67e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1015 - - gmx:100777658 1224.54