Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1002 ATGGATGAGCCATGGCTGAAATGGGTTTCTATTTTGGACACTAATGACTATCATTTATCCACTGAATGTGACATGAACTCTGTTGAAGAACCATTGGAGGGAGAGAATTCAGTGGATCCTGGAGAACTCTCATGGGAAAATCACTCCCCTAATTCATATCTCACAAAAGAAAGAACCACCCTTTTGAGCAATTCTTCATCTTTGGAAGAGATCAACACTAGCTTTGATATGACAAGTCTCAAACAACATGCTTCTCCACAGAAACCAAAGTCTTGCATTCTGTCTTTTGAGGATTCCACTTCAGTGCCAATTACTTCCAAGAAAACTTGCCAATTATATCATGGTGAACATTCAAAGGAGACACAAGAAGAGCTACCCAATAGAAAACCCCTCAAGAGGGATACAAGCTTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATATCAGCAGACTGTTCATAGCTCTTTCAGCCCTTATTCCGGGCTTGAAAAAGATGGACAAGGCTTCTGTTCTTTACAACGCTATAGAGCATGTGAAATATCTTCAGCAGCGTGTAAAGGATTTGGAAAAAGATAACAAGAAGAGAAAGACAGAATCCGTAGGATGTTTCAAAATAAATAAAACCAATGTTGCTGACAACGTTTGGACATGTGATGATAAACCTATCAAGATATGTCCCAAAGTTGAAGCAAGAGTCTCAGGAAAAGATGTTGTCATCAGAGTAACGTGTGAGAAGCAAAAGAACATTTTACCTAAGCTACTGGCCAAGCTTGAAGCTCATAATCTCTCCATAGTGTGTAGCAATGTTTTGCCATTTGGGAATTCCGCTCTCAGCATTACCAGCATTGCTAAGATGGACCATGAATTCAGCTTGACAGTGGACACGTACGACCTAGTGAAAACCTTGACAGGGGAATTGTTGGAGTGCAGTAAAATGCAACGATAA 951 0.4017 MDEPWLKWVSILDTNDYHLSTECDMNSVEEPLEGENSVDPGELSWENHSPNSYLTKERTTLLSNSSSLEEINTSFDMTSLKQHASPQKPKSCILSFEDSTSVPITSKKTCQLYHGEHSKETQEELPNRKPLKRDTSFDHIMAERKRRENISRLFIALSALIPGLKKMDKASVLYNAIEHVKYLQQRVKDLEKDNKKRKTESVGCFKINKTNVADNVWTCDDKPIKICPKVEARVSGKDVVIRVTCEKQKNILPKLLAKLEAHNLSIVCSNVLPFGNSALSITSIAKMDHEFSLTVDTYDLVKTLTGELLECSKMQR* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1002 316 MobiDBLite consensus disorder prediction 115 134 - -
Gso7g1002 316 PANTHER BHLH TRANSCRIPTION FACTOR 1 315 - -
Gso7g1002 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 198 IPR036638 GO:0046983
Gso7g1002 316 Coils Coil 180 200 - -
Gso7g1002 316 MobiDBLite consensus disorder prediction 31 50 - -
Gso7g1002 316 SMART finulus 140 189 IPR011598 GO:0046983
Gso7g1002 316 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 315 - -
Gso7g1002 316 Gene3D - 132 203 IPR036638 GO:0046983
Gso7g1002 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Gso7g1002 316 Pfam Helix-loop-helix DNA-binding domain 139 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1002 Gso-Chr7 13326399 13330615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1002 81 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.161 1.31e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g1002 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1002 - - gmx:100783561 628.632