Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1000 ATGAAGTGCTTTTACTATTTCAGAGACAAATCTAGGAGCAGTAAGCAAAGGTCAGCACCTGAACTGAAAGAGCAAGAGAAACTCGAGTTTTCAGGGCCTGAAAGGGTCACCAAGTCTTCATGCTCATCTACATCTCCTCGCGGTATACCAGAACTGTATGAGGAGAAGGGTCACAATTTGAGGGACTTCTCCTTCACAGAGCTCAAGCGTGCAACGAGTGATTTCAGCAGGCTTCTTAAGATAGGAGAAGGTGGATTTGGAAGTGTGTTTAAAGGTACAATCAAGCCTGCTGATGGGAATGGGAATTCTGTTTTAGTTGCCATCAAAAGGCTTAACAAGAATGCATTGCAGGGTCATAAGCAATGGTTAACTGAAGTTCAGTTTCTTGGTGTTGTGCAACACCCAAATCTAGTCAAGCTTATTGGATACTGTGCTTTGGATGATGAAAGAGGGATCCAGAGACTACTTGTATATGAATACATGCCGAATAAAAGCTTAGAGTTTCACCTTTTCAATAAAGCATATGATCCTCTTCCCTGGAAAACAAGACTTGAAATAGCAACTGGAGCAGCTCAAGGGTTAACTTATCTGCATGAAGAATTAGAAATTCAGGTGATATATCGAGATTTCAAAGCTTCAAATGTATTACTGGATGAAAACTTTAATCCAAAGCTTTCCGATTTTGGACTTGCCAGGGAGGGACCAGCAGCTGGTGATACTCATGTTTCAACAGCGGTTATGGGGACATATGGTTATGCTGCTCCAGATTACATTGAGACAGGCCATCTCACTGCCAAGAGTGATGTGTGGAGTTTTGGTGTGGTGCTATATGAAATACTTACCGGCAGGCGTTCAATGGAAAAAAACAGGCCCAAAACGGAGAAGAAATTACTGGAGTGGGTGAAGCAATACCCTCCTGATAGCAAAAGGTTTGGCATGATAATGGATCCACGACTTCAAGGAGAATATTCCATTAAAGGAGCACGAAAAATTGCTAAACTCGCACAGCATTGCCTGCGTAAGAGTGCGAAAGATCGGCCATCAATGAGTCAGGTGGTAGAGAGATTGAAGCAGATAATCCAAGATTCTGATGAAGAGCAGCACCCTGCAGATGATAAAAGTATTGAGGTATCTGAAAATGATCCAGTTGAAGCTGAAGAGGAGGCAAATCAATCAGGCTCTACAGAGTTATGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAAAGTGTGGAGAGTGCTAGTAAAAGAAGATTTATGACCCTTCAGAGAGCCAATGTGTCTTCATAG 1293 0.423 MKCFYYFRDKSRSSKQRSAPELKEQEKLEFSGPERVTKSSCSSTSPRGIPELYEEKGHNLRDFSFTELKRATSDFSRLLKIGEGGFGSVFKGTIKPADGNGNSVLVAIKRLNKNALQGHKQWLTEVQFLGVVQHPNLVKLIGYCALDDERGIQRLLVYEYMPNKSLEFHLFNKAYDPLPWKTRLEIATGAAQGLTYLHEELEIQVIYRDFKASNVLLDENFNPKLSDFGLAREGPAAGDTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEILTGRRSMEKNRPKTEKKLLEWVKQYPPDSKRFGMIMDPRLQGEYSIKGARKIAKLAQHCLRKSAKDRPSMSQVVERLKQIIQDSDEEQHPADDKSIEVSENDPVEAEEEANQSGSTELWKKRMEHLAKLGESVESASKRRFMTLQRANVSS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1000 430 Gene3D Transferase(Phosphotransferase) domain 1 161 384 - -
Gso7g1000 430 CDD STKc_IRAK 81 359 - -
Gso7g1000 430 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Gso7g1000 430 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Gso7g1000 430 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Gso7g1000 430 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Gso7g1000 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gso7g1000 430 PANTHER OS07G0495150 PROTEIN 23 418 - -
Gso7g1000 430 MobiDBLite consensus disorder prediction 393 414 - -
Gso7g1000 430 PANTHER OS01G0588500 PROTEIN-RELATED 23 418 - -
Gso7g1000 430 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1000 430 MobiDBLite consensus disorder prediction 11 48 - -
Gso7g1000 430 MobiDBLite consensus disorder prediction 11 33 - -
Gso7g1000 430 MobiDBLite consensus disorder prediction 361 430 - -
Gso7g1000 430 MobiDBLite consensus disorder prediction 361 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1000 Gso-Chr7 13200471 13207762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1000 1 398 Glycoside Hydrolase AT3G07070 41.232 1.43e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso7g1000 PK_Tyr_Ser-Thr 8.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1000 - - gmx:100784625 860.522