Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0997 ATGGAAGACTCGTGGCAGAATTGGATTTCTTCTTTGGAAATGGGTGACGACAATTCCAATGGTCAATCTCACATTAACTCACTTGATCAGGATAAGCTCCTCACTGGGATTGTCCTAGAGCCAGAGCCACCAAATTTCTCATTTCATCAAAGTGTCCACCACCACCACTCTTCTACCATGTCACAAAATAATCATCATCATAGTAATAACAATGTTTTGGTTCCCACCACAAGCACCATGGGAAGTAGTACCTTATCCTATGATGAGGATGCAAGCTTTGATGAGAGGCATGGCAAAATGCTCAAGTGTAATAGCTCAAACTCCATCACTATTTCTCAAGATATTGTTGCCAATTCACAGATACCATCCAAATCTACCTTCATTTTGTCCTTTGAAAACTCAACTGTGGAACCTGCTCTCCATGATAGACCTAATTATAACAATTCCCCTAAGCATTTTGAGGCCACATGTTCTTCCCTTTTGAGCTCAGAAATAACACTCAACAGTGACTATATCATCACTAAATCAGAGGCCAAGCAAGGTGCCAAGAAGCATAGAACCTCGTCTGAGATCAAAGATCACATAATGGCTGAGAGAAAAAGGAGACGGGAACTCACTGAGAGATTCATTGCACTCTCTGCCACCATACCCGGATTGAAGAAGACAGACAAGGCCTATATACTTCGGGAAGCTATCACATATATGAAACAACTTCAAGAGAGAGTGAAAGAGCTAGAGAATGAGAACAAGAGGAAAACAACATATTCAAGAATATTCATCAAGAAATCCCAAGTGTGCTCAAGAGAAGAAGCCACATCATCATGTGAAACCAACTCTTATAGATCCACGCCACCACTACCTCAAGTTGAAGCAAGGGTGTTGGAAAATGAAGTTCTCATTGGAATCCACTGCCAGAAACAAAAGGATATTGTGCTCAAAATCATGGCATTGCTTCAAAGTTTCCATCTCTCTCTTGCTAGTAGTAGTGTATTGCCATTCGGGACTTCCACACTAAAAGTTACAATCATTGCCCAGATGGGCGACAAATACGGTATGGCAGTCAATGATCTAGTAAAAACACTGAGGCAAGATCTCTTGAAGTCACATGACATTCAAAAGTCATATTCCAAAGAGTGCCAAATATAA 1146 0.4084 MEDSWQNWISSLEMGDDNSNGQSHINSLDQDKLLTGIVLEPEPPNFSFHQSVHHHHSSTMSQNNHHHSNNNVLVPTTSTMGSSTLSYDEDASFDERHGKMLKCNSSNSITISQDIVANSQIPSKSTFILSFENSTVEPALHDRPNYNNSPKHFEATCSSLLSSEITLNSDYIITKSEAKQGAKKHRTSSEIKDHIMAERKRRRELTERFIALSATIPGLKKTDKAYILREAITYMKQLQERVKELENENKRKTTYSRIFIKKSQVCSREEATSSCETNSYRSTPPLPQVEARVLENEVLIGIHCQKQKDIVLKIMALLQSFHLSLASSSVLPFGTSTLKVTIIAQMGDKYGMAVNDLVKTLRQDLLKSHDIQKSYSKECQI* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0997 381 Pfam Helix-loop-helix DNA-binding domain 194 239 IPR011598 GO:0046983
Gso7g0997 381 MobiDBLite consensus disorder prediction 44 70 - -
Gso7g0997 381 SMART finulus 195 244 IPR011598 GO:0046983
Gso7g0997 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Gso7g0997 381 PANTHER BHLH TRANSCRIPTION FACTOR 4 372 - -
Gso7g0997 381 Gene3D - 188 258 IPR036638 GO:0046983
Gso7g0997 381 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 372 - -
Gso7g0997 381 MobiDBLite consensus disorder prediction 50 70 - -
Gso7g0997 381 Coils Coil 228 255 - -
Gso7g0997 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 253 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0997 Gso-Chr7 13073150 13077662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0997 125 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.244 8.24e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g0997 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0997 - - gmx:100786209 720.309