Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0970 ATGAGCCCTCATGCTTTAAACACCAACGTGAATGCCCTTCATGACATTGGGCTCCCTGTATCGACACCATTTAAGGATGCTTCCGCGTCAGTGCCATCGACGGCAGTGTTTGGCCGGAACTCCAGCTTCCGGAACATTTTCTTGGCGGAGAACTGGGCAGAGCTTCCGTTGAAGGAGGATAACGCCGAAGACATGGTTATCTACGGTGTTCTGCGTGAGGCCGCCACCATGGGATGGCTCCCCGCCAATGGCAATGGGGTGAGCAAGGTAGGGATGGCTGTGAAAATGGAAAATGAGAGTCAAAATAGTGACAAAGCAGCTGCGTGTGGCACTCACGTGCCTCCAAGGAGGGGGTTGAGCTTCCGAGGCGTGCGGAGGAGGCCATGGGGAAAGTACGCGGCCGAGATAAGGGATGCTAAGAGGAATGGTGTGAGAGTGTGGCTTGGGACCTATGAGACTGCTGAAAATGCAGCTTTGGCTTATGATCGAGCCGCGTTTAAGATGCATGGCTCAAAAGCAAAGCTGAATTTTCCTCATTTAATTGCCTCGGCTCATCATCATGTCGAGCCAATTAGGATTTCCTTAAAGAAACATTCATTCGATGTTTCCTTGTCATCGTCGGAGGTGGCAGCAAAACGGAGTAAGAATGGCACTGCTTCCACAAATTTGGAGCTGAATGACTCAAATATGTTACAGTTTCCTATGGACAATAGGTGGCAATAA 723 0.5021 MSPHALNTNVNALHDIGLPVSTPFKDASASVPSTAVFGRNSSFRNIFLAENWAELPLKEDNAEDMVIYGVLREAATMGWLPANGNGVSKVGMAVKMENESQNSDKAAACGTHVPPRRGLSFRGVRRRPWGKYAAEIRDAKRNGVRVWLGTYETAENAALAYDRAAFKMHGSKAKLNFPHLIASAHHHVEPIRISLKKHSFDVSLSSSEVAAKRSKNGTASTNLELNDSNMLQFPMDNRWQ* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0970 240 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Gso7g0970 240 PANTHER DNA-BINDING DOMAIN 22 214 IPR044808 GO:0003700|GO:0009873
Gso7g0970 240 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Gso7g0970 240 CDD AP2 121 180 IPR001471 GO:0003700|GO:0006355
Gso7g0970 240 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Gso7g0970 240 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Gso7g0970 240 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Gso7g0970 240 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Gso7g0970 240 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Gso7g0970 240 PANTHER BNAC04G53270D PROTEIN 22 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0970 Gso-Chr7 12024340 12025265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0970 36 236 AP2-EREBP Transcription Factor Family AT2G44840 45.366 3.13e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso7g0970 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0970 K09286 - gmx:100804762 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0970 7 12024340 12025265 Gso3g0957 3 33611092 33612194 GST