Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0968 ATGGCCACCACAATATCTTGTGATTTCTCTTCAATGGAATCTATTCAACACTATCTTCTTGAGCCTGAACACGATTCCAACGCTCTCATGAACATTTCCAACCACGAAGTTTGCTATTCTGCAACGTACAATGCATTCCCAAGCCCTACGTTCAGCTTGGAGGGTGTCGTCCATGATGCAAAAGATTCCTTAGCATGCAAAAGAGAACACCCTAGGGAGGAGCGTGAAGTTCACGCGCCACCGGTATGGAAGCATTACCGGGGTGTGAGGCGTAGGACTTGGGGCAAGTTCGCGGCAGAGATAAGGGATCCAAAGAAGAATGGTGCAAGGATTTGGCTAGGCACTTATGAAACTGAAGAAGCAGCGGGTTTAGCTTATGATAGAGCTGCTTTCAAAATGCGTGGCAGCAAAGCTAAGTTAAATTTTCCTCATCTCATTGGCTCTCACGCGCCTCCGCAGCCAGTGAGAGTGACAAAGGCTTTGAAGCGAAACTCGCCAGGGAAGAGGAAAAATTTGGCTGACTTGTTAAACAGGTTGGCCAAGAATAGAAGCCAAATACTTATACAGGTGCTTGAAATGGGTTTACATGCAAATTATGTCAATGTTGAACAATGGTAG 618 0.4595 MATTISCDFSSMESIQHYLLEPEHDSNALMNISNHEVCYSATYNAFPSPTFSLEGVVHDAKDSLACKREHPREEREVHAPPVWKHYRGVRRRTWGKFAAEIRDPKKNGARIWLGTYETEEAAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPQPVRVTKALKRNSPGKRKNLADLLNRLAKNRSQILIQVLEMGLHANYVNVEQW* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0968 205 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Gso7g0968 205 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 185 - -
Gso7g0968 205 PANTHER DNA-BINDING DOMAIN 1 185 IPR044808 GO:0003700|GO:0009873
Gso7g0968 205 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Gso7g0968 205 PRINTS Ethylene responsive element binding protein signature 125 145 IPR001471 GO:0003700|GO:0006355
Gso7g0968 205 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Gso7g0968 205 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Gso7g0968 205 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Gso7g0968 205 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
Gso7g0968 205 CDD AP2 84 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0968 Gso-Chr7 11915093 11916078 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0968 5 158 AP2-EREBP Transcription Factor Family AT5G47220 42.077 9.35e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso7g0968 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0968 K09286 - gmx:100805648 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0968 7 11915093 11916078 Gso7g0968 7 11915093 11916078 ECH
Gso7g0968 7 11915093 11916078 Gso3g0964 3 33799186 33799915 GST
Gso7g0968 7 11915093 11916078 Gso18g1801 18 50481759 50482610 PCT