Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0954 ATGGGTGAGAAAGATGATGGCTTGGGTTTGGGGTTGAGTTTGAAGTTAGGATGGGGAGAAAATAATGATAACAATAATAATCAACAACAACAACACCCTTTCAACGTGCACAAGCCTCCTCAATCGGTTCCAAACCAAAGGGTTTCCTTCAATAGCTTGTTCCATTTTCATGACGAAAATCATGCAATGAGGAACACAGATCGGAGCTCCGAGATGCGGTCGTTCTTCCGCGGAATAGACGTGAATTTGCCACCGCCCCCGCCTTCGGCGGCTCTGGCGGCGTTCGATGACGAGAACGGGGTGTCCTCGCCGAACAGCACGATATCGAGCATCAGCGGGAAGCGGAGCGAGAGAGAGGGAAACGGAGAGGAGAACGAGAGAACGTCGAGTTCTCGCGGCGGCGGCGGAAGCGACGACGATGAAGGCGGCGCGTGTGGTGGAGACGCCGACGCCGATGCGTCGAGGAAGAAGCTGAGGTTGTCTAAGGAACAGGCCTTGGTGCTGGAAGAAACATTCAAGGAACACAACACTCTGAACCCGAAGCAAAAGCAAGCTTTGGCAAAGCAGTTGAATTTGATGCCTAGGCAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAATTGAAGCAGACTGAAGTGGATTGTGAATATTTGAAGAGGTGCTGTGAGAATCTAACTGAAGAGAATAGGAGGCTTCAAAAGGAAGTGCAAGAGCTCAGGGCATTGAAGTTATCCCCACAGCTTTACATGCAAATGAACCCTCCCACCACTCTCACAATGTGCCCTTCATGTGAGCGTGTTGCTGTCTCATCCGCATCCTCTTCCTCATCGGCCACCATGCCCTCTGCCCTGCCTCCAGCTAATCTCAACCCGGTGGGCCCTACCATCCAGCGGCCAATGCCCGTCAACCCTTGGGCAGCAATGTTGAATCAGCACCGTGGCCGGCCATAA 957 0.5246 MGEKDDGLGLGLSLKLGWGENNDNNNNQQQQHPFNVHKPPQSVPNQRVSFNSLFHFHDENHAMRNTDRSSEMRSFFRGIDVNLPPPPPSAALAAFDDENGVSSPNSTISSISGKRSEREGNGEENERTSSSRGGGGSDDDEGGACGGDADADASRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSSATMPSALPPANLNPVGPTIQRPMPVNPWAAMLNQHRGRP* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0954 318 Gene3D - 159 209 - -
Gso7g0954 318 SMART halz 211 254 IPR003106 GO:0006355|GO:0043565
Gso7g0954 318 ProSitePatterns 'Homeobox' domain signature. 186 209 IPR017970 GO:0000981|GO:0006355
Gso7g0954 318 SUPERFAMILY Homeodomain-like 141 212 IPR009057 -
Gso7g0954 318 MobiDBLite consensus disorder prediction 277 298 - -
Gso7g0954 318 PANTHER - 4 312 - -
Gso7g0954 318 Pfam Homeobox associated leucine zipper 211 245 IPR003106 GO:0006355|GO:0043565
Gso7g0954 318 Pfam HD-ZIP protein N terminus 1 119 IPR006712 GO:0005634
Gso7g0954 318 MobiDBLite consensus disorder prediction 99 115 - -
Gso7g0954 318 ProSiteProfiles 'Homeobox' domain profile. 151 211 IPR001356 GO:0003677
Gso7g0954 318 MobiDBLite consensus disorder prediction 1 46 - -
Gso7g0954 318 Pfam Homeodomain 155 209 IPR001356 GO:0003677
Gso7g0954 318 SMART HOX_1 153 215 IPR001356 GO:0003677
Gso7g0954 318 MobiDBLite consensus disorder prediction 18 46 - -
Gso7g0954 318 MobiDBLite consensus disorder prediction 87 151 - -
Gso7g0954 318 Coils Coil 217 247 - -
Gso7g0954 318 CDD homeodomain 155 212 IPR001356 GO:0003677
Gso7g0954 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0954 Gso-Chr7 11722188 11725996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0954 63 310 Homeobox Transcription Factor Family AT3G60390 64.231 1.11e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso7g0954 HD-ZIP_N 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0954 K09338 - gmx:100810641 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0954 7 11722188 11725996 Gso7g0954 7 11722188 11725996 ECH
Gso7g0954 7 11722188 11725996 Gso3g0986 3 34042030 34045814 GST
Gso7g0954 7 11722188 11725996 Gso18g2070 18 53662724 53666676 PCT
Gso7g0954 7 11722188 11725996 Gso9g1984 9 44262559 44266182 PCT