Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0944 ATGCACGGGAAAAAGGAGCAAGAAGAATACATAAGGAAAGGACCATGGAAAGCAGAAGAAGATGAGATGCTACTGAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGGACTGGCAAGTCGTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTTGAGGAAGAGAGGGTTGTAATAGAGTTGCAGGCACAATTAGGGAACAGGTGGGCTAAGATTGCATCCTATTTGCCAGGGAGAACAGACAATGATGTCAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTGCAAACATCAGCAACTCCTAAATCGCAGAAAAATAAAACTAGAGTTCCTTCCCTTCATGATGTTCCAATTTTGCAGCCTCCTAAGTTCAGTTCACCATCAGAGGGAGAACCATCATCAAAGCCTCAGTCATGCTCACTGCCCTACATTGATAATTCTGAGGTTATCAAAATGGTGTCTTTGCCAGATCTCATAAAGTCTGAGTTGCCTAGTTCTGACACAATCCATGTTGAACAAGAGTTTACCCTTTTTGAGAACTACAAAAGCACTGAACAGATTGCATTTCCTCAGATTCCAGAACTCCAAAATGGCCTCACATTCTCAATGGAAAACCAAGATCTCTTGCCCACAATTGATGAGCCATGTTTCATTGAAGAATTGTGTCCTCTTGATGCATCTGAGTTTGGAATAGGTCCACAACACCCCATTGGGTTCCCTTTCTTTCAGCCACCAGGAAGTTGCAGATTAGGAACAGGGGATGCAATTGATAACTCCAAAATCAGTGACAGCTTCTTCGATGATTTCCCTGTGGACATGTTTGATCACATGGACCCACCTGCAAGCCCTTCAAACCTCTGA 933 0.4352 MHGKKEQEEYIRKGPWKAEEDEMLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQLGNRWAKIASYLPGRTDNDVKNFWSSRQKRLARILQTSATPKSQKNKTRVPSLHDVPILQPPKFSSPSEGEPSSKPQSCSLPYIDNSEVIKMVSLPDLIKSELPSSDTIHVEQEFTLFENYKSTEQIAFPQIPELQNGLTFSMENQDLLPTIDEPCFIEELCPLDASEFGIGPQHPIGFPFFQPPGSCRLGTGDAIDNSKISDSFFDDFPVDMFDHMDPPASPSNL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0944 310 Gene3D - 13 65 - -
Gso7g0944 310 MobiDBLite consensus disorder prediction 150 165 - -
Gso7g0944 310 SMART sant 12 62 IPR001005 -
Gso7g0944 310 SMART sant 66 114 IPR001005 -
Gso7g0944 310 MobiDBLite consensus disorder prediction 121 165 - -
Gso7g0944 310 PANTHER TRANSCRIPTION FACTOR DUO1 1 309 - -
Gso7g0944 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Gso7g0944 310 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso7g0944 310 CDD SANT 69 108 IPR001005 -
Gso7g0944 310 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Gso7g0944 310 CDD SANT 15 60 IPR001005 -
Gso7g0944 310 Gene3D - 68 137 - -
Gso7g0944 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Gso7g0944 310 Pfam Myb-like DNA-binding domain 16 75 - -
Gso7g0944 310 PANTHER TRANSCRIPTION FACTOR DUO1 1 309 - -
Gso7g0944 310 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0944 Gso-Chr7 11427138 11429291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0944 1 307 MYB Transcription Factor Family AT3G60460 49.375 2.21e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso7g0944 Myb_DNA-bind_6 6.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0944 K09422 - gmx:100818656 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0944 7 11427138 11429291 Gso7g0944 7 11427138 11429291 ECH
Gso7g0944 7 11427138 11429291 Gso3g0995 3 34231360 34233470 GST