Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0936 ATGGAAATCAAACGAGTTTGGGATTATGTGGGAGACAACTATGTTGATAGACTTATTCAGTCCAAAACTGATGGGATGTTGGTTGAGATGAACACTCAGTGTGCACATGCAGACAATGGATGTGGAAGTTGCAGCTGTGAAGATAATGCCATGAATGAGGCTATACTTAATAGCAAACTTGAAGCTGTAACATATAGAATCATAATTCCCAAGCCTATCATAGCAGGGTCTATTTATTTTTATGCACCCTCCACTCATTCTTTCTGTACCACAATAATCAAAGTCTCAACCATGAGAAAACGTATCAATATGGAAAGTGATGCTGACTTCAATTCCTTTGCCACATCCTCCTCTTCCACCACACCTTCAATCTTCTTTGACACTAACACTTCTAGCACATCCTCCTCCTCAACATCTCCTACCTCAAATTCAGAATCATGCACCAAAGAACACTCCAAAACACCTCAAAATGACTCAACCACTTCTCAAACCTCATTGGAAAATGGAAAGGACTCAAAAGGGTGCAAGAAGAGGCAGATAGACAATAGCAACCAGAATCACCACCCTACTTATAGGGGTGTAAGGATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGTGAGCCGAGAAAGAAGTCAAGAATATGGCTAGGAACATACCCTACAGCAGAAATGGCAGCTAGAGCACATGATGTGGCTGCCTTAGCCATCAAGGGCCATTCAGCATACCTCAATTTTCCTGAATTGGCTCAAGAGCTTCCAAGGCCAGTTAGCACATCTCCTAAGGACATTCAAGCTGCAGCTGCAAAAGCTGCAAATACTGCCTTTGAGGAGGTTAGGCATTGTCAAATAACTGAAGAAGAAGCAGAACAAAACCAAGCAGAACAAGCTTCATCTTCAACTCTCTCAATGGACAATCCTCAAGAGCCTTCAAGTTCTCATTCTACCATTGATGATGACACTTTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAATGGACTTTGCTCCTTTTCTTCTTCTTGGCATTTGTGTGCAGTTGATAGTGGCTTTAGGCTTGAGGAGTCATTTTTTTATGAGAACCATTAG 1092 0.4212 MEIKRVWDYVGDNYVDRLIQSKTDGMLVEMNTQCAHADNGCGSCSCEDNAMNEAILNSKLEAVTYRIIIPKPIIAGSIYFYAPSTHSFCTTIIKVSTMRKRINMESDADFNSFATSSSSTTPSIFFDTNTSSTSSSSTSPTSNSESCTKEHSKTPQNDSTTSQTSLENGKDSKGCKKRQIDNSNQNHHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPVSTSPKDIQAAAAKAANTAFEEVRHCQITEEEAEQNQAEQASSSTLSMDNPQEPSSSHSTIDDDTLFDLPDLFPDGNNGLCSFSSSWHLCAVDSGFRLEESFFYENH* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0936 363 Pfam AP2 domain 189 240 IPR001471 GO:0003700|GO:0006355
Gso7g0936 363 SUPERFAMILY DNA-binding domain 190 248 IPR016177 GO:0003677
Gso7g0936 363 SMART rav1_2 190 253 IPR001471 GO:0003700|GO:0006355
Gso7g0936 363 PRINTS Ethylene responsive element binding protein signature 191 202 IPR001471 GO:0003700|GO:0006355
Gso7g0936 363 PRINTS Ethylene responsive element binding protein signature 213 229 IPR001471 GO:0003700|GO:0006355
Gso7g0936 363 PANTHER ETHYLENE RESPONSE FACTOR 103 363 - -
Gso7g0936 363 Gene3D AP2/ERF domain 190 248 IPR036955 GO:0003700|GO:0006355
Gso7g0936 363 MobiDBLite consensus disorder prediction 287 319 - -
Gso7g0936 363 MobiDBLite consensus disorder prediction 289 319 - -
Gso7g0936 363 MobiDBLite consensus disorder prediction 128 169 - -
Gso7g0936 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 103 363 - -
Gso7g0936 363 ProSiteProfiles AP2/ERF domain profile. 190 247 IPR001471 GO:0003700|GO:0006355
Gso7g0936 363 MobiDBLite consensus disorder prediction 128 192 - -
Gso7g0936 363 CDD AP2 191 249 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0936 Gso-Chr7 11249454 11259341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0936 176 359 AP2-EREBP Transcription Factor Family AT2G44940 55.769 9.29e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso7g0936 AP2 5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0936 - - gsj:114420351 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0936 7 11249454 11259341 Gso3g1003 3 34465615 34467006 GST