Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0930 ATGGACTTTGGAGAGAACAACATGTTCAGCCTTAACACCCACACCAAAGAGGAAAACGAAAACACTCCTAACAATAACAACAACATTGTCAATGTTTGGTATTCATCATGGGATGCTACTACTACTAATAGTAATACACTACACACCTCCACCACGGCGGCGGAAGGCTACGCCGGCGGAAGTCACAGCCACCACCACCAGCAACTATACGGCGGTGAAGGGTGTCACGTGCAGGCTGACCCTCACCTCACGTGCTTGCATCTTGGTAAAAGACATTACTTTGAGGATGTTACAACTAACGGTGATGTTAACAATGCTACCCCTTTGGGGAACCGACACGTGTGCAGTGGTGGTGGTGCGGGTTATGTTTTTGCGGGTAACGATAAGAGAGGGAGGGGGTATTATAGAGGAGGAGGAGCGGCTGGTGGTGGGAAAACGGCGCCGTTTGCGATGGTTCCTCGATGTCAGGTGGAGGGATGCCACGTGGCGCTGGTGAACGCGAAGGAGTACCACAGGAGGCACAGAGTTTGCGATATGCATTCCAAGGCACCCAAAGCAGTGGTGTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGGAGTTGTAGGAGGAGATTGGCGGGCCATAACGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGGAATTCTAGACAAGGGTGTGCTCTCTCTCTTCTGTCATCTGGGAGTGGAAGTAGGGATCATCATAATTGGCTATCTCATCATGCGGATTTCTCCACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAATCGTGCTGCCCTAATGACTAGACAACAACAACAACTTGTTTATGATCGAGTTTGGCCTCATCTTGTTGTGGCGCCCCACCATGATGCGGATGCTGCAGTGGAAGAAGAAGACTTTGAGGACTTACAACAACAACAACAACCTGAGTCCAATTATTTTCCACAACCTATGTTTCCACAGACACAATAA 1029 0.4869 MDFGENNMFSLNTHTKEENENTPNNNNNIVNVWYSSWDATTTNSNTLHTSTTAAEGYAGGSHSHHHQQLYGGEGCHVQADPHLTCLHLGKRHYFEDVTTNGDVNNATPLGNRHVCSGGGAGYVFAGNDKRGRGYYRGGGAAGGGKTAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSRQGCALSLLSSGSGSRDHHNWLSHHADFSTRCSAALRELIAENRAALMTRQQQQLVYDRVWPHLVVAPHHDADAAVEEEDFEDLQQQQQPESNYFPQPMFPQTQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0930 342 MobiDBLite consensus disorder prediction 315 342 - -
Gso7g0930 342 SUPERFAMILY SBT domain 153 231 IPR036893 GO:0003677|GO:0005634
Gso7g0930 342 Gene3D - 148 216 IPR036893 GO:0003677|GO:0005634
Gso7g0930 342 Pfam SBP domain 155 228 IPR004333 GO:0003677
Gso7g0930 342 MobiDBLite consensus disorder prediction 324 342 - -
Gso7g0930 342 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Gso7g0930 342 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 20 326 - -
Gso7g0930 342 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 326 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0930 Gso-Chr7 11011370 11014736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0930 152 250 SBP-box Gene Family AT2G42200 63.366 2.46e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso7g0930 SBP 2.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0930 - - gmx:100780159 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0930 7 11011370 11014736 Gso3g0428 3 7204536 7206210 GST
Gso7g0930 7 11011370 11014736 Gso7g1310 7 19025729 19026671 PCT