Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0925 ATGGACTTGTACGGTTCCTTTTCCACCCCTTCAGATTGCTTACATATTGATGATTTTCTAGATTTCTCCAACATCACCACCGACACCCACCACCACCTTCCTCCTCCGCAAAACTCTCCATTAATCTCCCACGACGACGCCAATCTCTTCTTCAATTTCCCTTCCGTTCCGACCGACGAAGCGGCGGAGCTGGAGTGGCTCTCCCAGTTCGTGGACGACGACGCGACGTCGTTTCACAGCTTCCCAGCAACCGCATCGATTGGATCCCACTCGACGTCGTTTCTCTCCAACAATAACAACAGAAACGATAATAACGAATATCCCAAATCTTCATTATCTTCAAACATTCCATGTTCTTCAGCGGTGGCGGGAAAATCGAGAGCGAGGAGGGAAGGGTCGGTTACCGGCGACGGCGGCGTGCGGCGGTGCAGCCACTGTGCCTCGGAGAAGACGCCGCAGTGGCGCGCGGGACCGCTGGGACCGAAGACGCTGTGCAACGCGTGCGGGGTTCGGTTCAAGTCGGGTCGGCTCGTACCCGAATACCGACCCGCGGCGAGCCCCACGTTCGTGCTGACTCAGCATTCGAACTCGCACCGCAAGGTCATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGCCACCAACAACAACAACAATTACAACAAGAGCAATGCCACCGTCACACTCACAACCACCACGATTTCAAAGTTTGCTGA 714 0.556 MDLYGSFSTPSDCLHIDDFLDFSNITTDTHHHLPPPQNSPLISHDDANLFFNFPSVPTDEAAELEWLSQFVDDDATSFHSFPATASIGSHSTSFLSNNNNRNDNNEYPKSSLSSNIPCSSAVAGKSRARREGSVTGDGGVRRCSHCASEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLRHQQQQQLQQEQCHRHTHNHHDFKVC* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0925 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 201 - -
Gso7g0925 237 CDD ZnF_GATA 142 189 IPR000679 GO:0006355|GO:0043565
Gso7g0925 237 ProSiteProfiles GATA-type zinc finger domain profile. 141 173 IPR000679 GO:0006355|GO:0043565
Gso7g0925 237 Pfam GATA zinc finger 143 176 IPR000679 GO:0006355|GO:0043565
Gso7g0925 237 PANTHER GATA TRANSCRIPTION FACTOR 2 13 221 - -
Gso7g0925 237 SMART GATA_3 137 187 IPR000679 GO:0006355|GO:0043565
Gso7g0925 237 Coils Coil 201 221 - -
Gso7g0925 237 MobiDBLite consensus disorder prediction 96 121 - -
Gso7g0925 237 ProSitePatterns GATA-type zinc finger domain. 143 168 IPR000679 GO:0006355|GO:0043565
Gso7g0925 237 MobiDBLite consensus disorder prediction 96 141 - -
Gso7g0925 237 PANTHER GATA TRANSCRIPTION FACTOR 13 221 - -
Gso7g0925 237 Gene3D - 140 187 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0925 Gso-Chr7 10820592 10823383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0925 33 219 C2C2-Gata Transcription Factor Family AT2G45050 52.752 5.85e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso7g0925 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0925 - - gsj:114418730 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0925 7 10820592 10823383 Gso7g0925 7 10820592 10823383 ECH