Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0916 ATGGCGGACGTCATGGTAATGAAGGAGATCGAGGACACGGCGCTGCGTCTCGGCGTCGATCTCTCCACTCTCGATCTCGACGCCATTCGCCTCCCTCCCGGCGAAGATTGCGGCATCGTCAGTGATGACGAGGTGGTTTACCAGGAGGAGAATCTCGAGTTTGAGTCTGGATTTGGTAACATCATTGTCGTGGATAACCTCCCCGTGGTTCCGAGGGAGAAGTTCGAGAAGCTTGAAGGAGTGGTTCGAAAAATTTATAGTCAAATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGGTGCCTAATGAGTGGGCTCCTCCTGAAACTAAGCCATATGCTCCAGGGGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCGGATACTGAGGTTTTGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCATTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATACTTGGCCACTGTTCACAGACAGGGGGCAGCAGTCTGGGGAGGTGCTGCAAGCTTTAATAGACTTATGCGATATGCACATCCTCAGGTAAAACTTATTGATTTTTCGCCTGGTGAGAAGTATTTGGTAACATATAGCAGCCATGAACCAAGCAATCCCCGAGATGCCAATAGAGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGGGACTTCAAAGGGAGTGCTGATGATTTTGCAGTTGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATATACTCTCCGTTTATGAGGCAGAGACCTTTTCTCTTGTTGACAAGAAATCTTTAAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCAACTGATCCAATTATTGCTCTTTTTGTTCCTGAGATGGGAGGCGGTAACCAGCCTGCCAGGGTTAGTCTGATTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATTTACTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTAGAGAGGTACACGAAAACAAAAAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGGGATATACCAATTGAAGTTTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCGTTTGCTTGGGAGCCAAAGGGTCACAGATTTGCAGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCATTTATTCCATGCGTACTGGTCAGAACAGCCGAGTTTCAAAACTCATTACTCTGAAGGGCAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCCGGTCGCTACATTGTACTGGCTGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAACGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGATATGTTGCAACTGCGGTGACTTCAGTTCATGAAATGGAGAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCAAGGCCACCATCTTTCTTGACTCCGGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAATACAGCAAGAAATACGAGGCAGAAGATCAAGATGTTTCCTTGCTGCTGAGTGAACAGGAGCGTGAGAAGCGCAGGATGTTGAAGGAAGAGTGGGACAAGTGGGTTAATGAATGGAAGCAGATCCACGAAGAAGAGAGTTTACAGAGGCAAAAGCTCAGGGATGGAGAGGCTAGCGATGAAGAGGAGGAATACGAGGCAAAGGACATCGAGGTGGAGGAAGTGATCGATGTAACAAAAGAGGTCCTTCACCTTGAGTATGGTCAAGAGTGA 2157 0.4539 MADVMVMKEIEDTALRLGVDLSTLDLDAIRLPPGEDCGIVSDDEVVYQEENLEFESGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVSMFDDFDRFMKVPNEWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGAASFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNILSVYEAETFSLVDKKSLKVENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKIYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTGQNSRVSKLITLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKQIHEEESLQRQKLRDGEASDEEEEYEAKDIEVEEVIDVTKEVLHLEYGQE* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0916 718 Gene3D - 391 618 IPR015943 GO:0005515
Gso7g0916 718 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Gso7g0916 718 PIRSF Transl_init_eIF3b 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso7g0916 718 PANTHER BNACNNG51870D PROTEIN 5 711 - -
Gso7g0916 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Gso7g0916 718 Gene3D - 141 380 IPR015943 GO:0005515
Gso7g0916 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso7g0916 718 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Gso7g0916 718 SMART rrm1_1 61 142 IPR000504 GO:0003723
Gso7g0916 718 CDD RRM_eIF3B 59 142 IPR034363 -
Gso7g0916 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso7g0916 718 MobiDBLite consensus disorder prediction 675 694 - -
Gso7g0916 718 Gene3D - 59 140 IPR012677 -
Gso7g0916 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Gso7g0916 718 SUPERFAMILY RNA-binding domain, RBD 50 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0916 Gso-Chr7 10667030 10671310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0916 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.901 0.0 1178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0916 K03253 - gmx:100817394 1454.11