Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0913 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCGGATGCAGAAGTGGTGTCCCTCTCGCCGAAAACGTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAGCCAACTTGCTTGCACCATGACCCATGTCATGCCTTGGGTGACCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCTTGTGATTGTGGCCGCGTTTTCTCAAGGGTTGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCTCATGAATCTCAACCTCTTCAACCATCTGCATGCCTTTCTAGAACAGCTTCAAGCCCAAGTCCTTCAAGTGAGACCAATTTCAGCACAGCTCCATGGCCAACAAGGATGATAATACAAAAGCCATCAGAAACACCCACAATCTTCATGAACAACCCTATTACTGCTATCACCACTGCTGAAACCTCCTCCAAGAGCAACAACAAACTACTCCACCCCAACTTGGATCTTCAACTCTCCACCCCCACCAATAACAACAACTCCAACACCTCCAACACCAACACATCAAATATTGCAAACCCCATTGATAATGCTGCAATATCAGCTAAGAGGGATCATTATCATGAGAACCATTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATATGAGTGAGAAGAATGATCAATCAAACAGGAACTCATCAGAGAAGAGCAGCAATAACAGCAACAACATTAATGATCAGAATAATAAGCAGCAGTCCAACAACATGGCCTTGTTGAGGGTTCAAGAGCAAGCAAGGGAGCACTTGAGGATAGCCATGGCAGAGAAAGCATATGCTGAGGAAGCAAGGAAGCAAGCAAAGAGGCAGATTGAGCTTGCGGAGCAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGTGGAACTAGACAAGGCCTACGCTTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACTCTTGCAAACAACAGTTCCAAGCTCGAAATGCAACCACCACCAGCCCCGACGATAATTCTTTGGTGCTGAGCTACGTTTCTTCTGCTATTACCACGGAAGGAGGAGAAGTTGAAAACGATAATATTGCAAAAGATCATGCCAAAGACAACAACTAA 1452 0.4669 MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPHESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIQKPSETPTIFMNNPITAITTAETSSKSNNKLLHPNLDLQLSTPTNNNNSNTSNTNTSNIANPIDNAAISAKRDHYHENHSTHLQLSIGSSDMSEKNDQSNRNSSEKSSNNSNNINDQNNKQQSNNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQVELDKAYALKEHAMKQINSTMLQITCHSCKQQFQARNATTTSPDDNSLVLSYVSSAITTEGGEVENDNIAKDHAKDNN* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0913 483 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 466 - -
Gso7g0913 483 MobiDBLite consensus disorder prediction 195 222 - -
Gso7g0913 483 MobiDBLite consensus disorder prediction 308 348 - -
Gso7g0913 483 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Gso7g0913 483 Gene3D Classic Zinc Finger 45 130 - -
Gso7g0913 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Gso7g0913 483 MobiDBLite consensus disorder prediction 1 24 - -
Gso7g0913 483 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Gso7g0913 483 PANTHER OS03G0310200 PROTEIN 1 466 IPR039288 GO:0009630
Gso7g0913 483 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Gso7g0913 483 MobiDBLite consensus disorder prediction 187 222 - -
Gso7g0913 483 MobiDBLite consensus disorder prediction 1 44 - -
Gso7g0913 483 MobiDBLite consensus disorder prediction 263 288 - -
Gso7g0913 483 Coils Coil 366 407 - -
Gso7g0913 483 MobiDBLite consensus disorder prediction 300 348 - -
Gso7g0913 483 SMART c2h2final6 57 79 IPR013087 -
Gso7g0913 483 SMART c2h2final6 98 128 IPR013087 -
Gso7g0913 483 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0913 Gso-Chr7 10588872 10592551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0913 20 471 C2H2 Transcription Factor Family AT2G01940 53.261 2.13e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso7g0913 zf-C2H2 0.0046 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0913 K25871 - gmx:100785333 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0913 7 10588872 10592551 Gso9g1400 9 37994091 37997756 GST
Gso5g2118 5 44085809 44087984 Gso7g0913 7 10588872 10592551 PCT
Gso8g0478 8 4389027 4391041 Gso7g0913 7 10588872 10592551 PCT
Gso7g0913 7 10588872 10592551 Gso5g2118 5 44085809 44087984 PCT
Gso7g0913 7 10588872 10592551 Gso8g0478 8 4389027 4391041 PCT