Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0910 ATGGAGAACTCATCATCTTCAAACTATCTCTACCGAGAGTGCCTCCGCAACCATGCAGCCAGCCTGGGCAGCTATGCCACGGATGGCTGCGGGGAGTTCACCCTCGACGCGGATAGCGTCTCGTCCCCTTCCCTCCAGTGCATGGCCTGCGGCTGTCATCGCAACTTCCACCGCAAGGTCACGTGCCCTGCGGTGGAAGGGCCGCAGGTCGTGACTGGAGGGAGCGGAGACATGATGGAGTATTCAGGAGGGGAGGGAAGAATGGAGATGGGAGAGAGGAGTGGTGGAGGAAGCAGCAAGAAGAGGTTCAGGACGAAGTTTAGCGCTGAGCAGAAGGAGAAGATGTTGGGGTTTGCGGAGAAGCTAGGGTGGAAGCTGCAGAGGAAAGAGGTGGATGATGAGATTGAGAGGTTCTGTAAGAGTGTGGGAGTCACTAGACAAGTTTTCAAGGTGTGGATGCATAACCACAAGAACAATTCTAACTCTTCTACTAATTCTTCTGTTAATCTCTCTTCTCTCACTCAGTCATGA 531 0.5348 MENSSSSNYLYRECLRNHAASLGSYATDGCGEFTLDADSVSSPSLQCMACGCHRNFHRKVTCPAVEGPQVVTGGSGDMMEYSGGEGRMEMGERSGGGSSKKRFRTKFSAEQKEKMLGFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSTNSSVNLSSLTQS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0910 176 MobiDBLite consensus disorder prediction 73 102 - -
Gso7g0910 176 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 1 166 - -
Gso7g0910 176 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 166 - -
Gso7g0910 176 MobiDBLite consensus disorder prediction 156 176 - -
Gso7g0910 176 Gene3D - 85 164 - -
Gso7g0910 176 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 11 60 IPR006456 -
Gso7g0910 176 Pfam ZF-HD protein dimerisation region 9 61 IPR006456 -
Gso7g0910 176 SUPERFAMILY Homeodomain-like 91 159 IPR009057 -
Gso7g0910 176 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 11 59 IPR006456 -
Gso7g0910 176 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 100 158 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0910 Gso-Chr7 10552336 10553402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0910 11 158 ZF-HD Transcription Factor Family AT4G24660 43.452 7.08e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso7g0910 ZF-HD_dimer 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0910 - - gmx:547766 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0910 7 10552336 10553402 Gso9g1403 9 38037546 38038331 GST
Gso5g2117 5 44074116 44074951 Gso7g0910 7 10552336 10553402 PCT
Gso8g0477 8 4375369 4379454 Gso7g0910 7 10552336 10553402 PCT
Gso7g0910 7 10552336 10553402 Gso5g2117 5 44074116 44074951 PCT
Gso7g0910 7 10552336 10553402 Gso8g0477 8 4375369 4379454 PCT