Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0897 ATGGTGTTGGGGTGGAGGAGAAGGAAGGGCTGCAACAATAACCGCCGAAAAGGTGGCAAATCCATCACGGAGTTGGTGATTCCCAACCACTTCAGGTGTCCAATTTCCCTTGACTTGATGAAGGATCCTGTGACATTGTCAACAGGGATAACCTATGATAGGGAGAGTGTGGAGAGGTGGTTTGATGAAGGGAACATCACATGTCCTGTTACAAACCAGGTTGTGAGAAACTTTGACATGATTCCAAACCATTCCCTCAGGATAATGATTCAAGATTGGTGTGTGGAGAATAGGCAACATGGGGTGGAGAGGATTCCAACACCAAGGATACCAATTAGCCCAAATGAGGTTGCTGAGCTTCTGATGCAAGTGAAGGCCTCAGCAAGGGGTTTGGACCAATATGGTTGCCTTAAATTGGTGCAGAAATTGAAGAGGTGGGGTGGTGAGAGTGAGAGGAACAAGAGGTGCATAGTGGACAATGGAGCACCTGTGGCATTGGCTTCATCATTTGATGCATTTGCCAATGATTCTGTTGAGAGAAATGTGGTGGTTCTTGAGGAGATTTTGTCAGCACTCAATTGGATGTTTCCACTTCAATTGGAGGCACACAAGTCTTTGGGGTCTTTGGCTTCTCTAAGATGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAAAGAGCTTCTTTCCTTTGGTGATGTGCAGCATGTGGAGGCCTTGTCACAAATTGAAGGGGTCAATGTGCTCTTGGAGTTCATCAACAAGAGGATTAGTCCAACCATCACAAAGGCCTCATTGAGGGTGGTTTGGTACTTGGTCTCATCCTCTTCCAAATCAAGTGAGAAGATGAGGTTGGCATTTGTTGAATTGGGTTTGGTTTCTTCTTTGCTTGACATTCTCATTGACTCAGACAAGAGCCTGTGTGAGAAGGCTGCGGCCATTTTGGACTCTCTATGCAGCTCTGAAGAAGGAAGGAACAAAGCCTGCGGGAATGATCTAACAATTCCTCTTTTGGTGAAGAAAATTCTCAGAGTTTCACCACTGACCACAGACTATTCTGTTTCTGCCATTTGGAAACTGTGCAAGTTTGGAGAAAAAGATGAAGGGAGAACCCTTGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAGCTCTTGTTGGTGTTGCAAGTTGGATGTGGTGATGAGACTAAGGAGAAAGCAACTGAACTTCTCAAATTCCTCAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1314 0.449 MVLGWRRRKGCNNNRRKGGKSITELVIPNHFRCPISLDLMKDPVTLSTGITYDRESVERWFDEGNITCPVTNQVVRNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPISPNEVAELLMQVKASARGLDQYGCLKLVQKLKRWGGESERNKRCIVDNGAPVALASSFDAFANDSVERNVVVLEEILSALNWMFPLQLEAHKSLGSLASLRCMVWFLKHQDLSGKEKSIVALKELLSFGDVQHVEALSQIEGVNVLLEFINKRISPTITKASLRVVWYLVSSSSKSSEKMRLAFVELGLVSSLLDILIDSDKSLCEKAAAILDSLCSSEEGRNKACGNDLTIPLLVKKILRVSPLTTDYSVSAIWKLCKFGEKDEGRTLVEALQVGAFQKLLLVLQVGCGDETKEKATELLKFLNPYRAELECIDSDYKNVKRSF* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0897 437 Pfam U-box domain 27 98 IPR003613 GO:0004842|GO:0016567
Gso7g0897 437 CDD RING-Ubox_PUB 31 73 IPR045210 -
Gso7g0897 437 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 437 - -
Gso7g0897 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
Gso7g0897 437 PANTHER WDSAM1 PROTEIN 16 437 IPR045185 GO:0061630
Gso7g0897 437 SUPERFAMILY RING/U-box 21 103 - -
Gso7g0897 437 Gene3D - 116 416 IPR011989 -
Gso7g0897 437 SUPERFAMILY ARM repeat 201 416 IPR016024 -
Gso7g0897 437 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Gso7g0897 437 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0897 Gso-Chr7 10369338 10371047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0897 23 437 U-box Gene Family AT5G37490 44.391 1.12e-112 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0897 - - gmx:100794340 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0897 7 10369338 10371047 Gso9g1412 9 38161039 38162871 GST