Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0889 ATGACGAGTTCAAGCGTGAAGAATGAAGATGAAGAGAAGGGGTCTCTAGCTGGTTCGAGTAAGACTGAGATTTTTAGGGATAGTGCCAAACACTCAGAAGATTACAGAGATATGAGTTCTCAAATTCGGAGAGAAAGAAGGGAATGGTCCAGGGTTCCACCACAAGGTGCTACTCGTCAAGAATGGGTCCCCAGAGGGGCTGCTGCTGCTGCTGCGTCCACCAATGTCGCTCAGCCATCAAATTTGCATTCAAACAACAATGCTGATGCTGGTTCTTCCAATCTAGGGGTGGCTGTTGCTGCTCCGTCCGTGAGTCGCAGTAGAAGCAACAATCATGGGAATGATGTTGGTTCTTCCAATCAAGGGGTGGCTGTTGCTGCTCTGCCGGTCAGTCGGGGTAGAAGCAACAATCATGGGAATGATGCCGGGTTTTCCAATCAAGGGGTGGCTGTTGCTGCTCTGCCGGTGAGTCACGGTAGAAGCAACAATCATGGAAATGATGCCGGGCCTTCCAATCAAGGGGTGGCTGTTGCTTCTCCGCCGGTGAGTCACGGTAGAAGCAACAATCCTGGGAATGGTGCTGGTTCTTCCAATCAAGGTTTGGCAGTTGCTGCTCCGCCGGTGAATCGTGGTAGAAGCAAAAATCATGGGAAAGATTCTGTCTCTTCCAATCAAGGGGTGGCTGTTGCTGCACTGGGGAGTCGTGGTAGAAGCAACAATCATGGGAGTCATTGGATGGAAATGGAAAAGGATAAGGGGAGCAGGAGTGGGAGTCAGGTGGAGAAGGGATTGAGAGTGGGAGTCAGAGACTCTAGTTTGCCTCAATTGGTGCAAGAGATTCAGGAGAAGCTCATGAAAGGTACCGTGGAGTGCATGATTTGCTATGAGATGGTCCAGAGGTCTGTGCCGTTGGCGGTGTCCTGGTTGTCAGTCTGTGAAATTTACCTCTTCAAAGTGATTTTTTCTTGTAGTTCCTATTGTCTAAAGATACTTGGTTGTGGTAATCATGTCTGTAGTGAGATTTGTCATCCAGGAAGCTGTGTGGAATGTGAATTGTTACCTAGCCGGGTTAAGACATGCTGTTGTGGGAAAACAAGGTTGGAGAATGAACGCCAGAGTTGTTTGGATCCGATACCTACCTGCTCGAAAGTATGTGGCAAGCTGCTTCATTGTGGCATGCATAGTTGTAAAGAGGCATGCCATGTTGGGGAGTGTCCACCTTGTTTGGTTGAAGTTTCACAGAAGTGCTGTTGTGGCTCAACTTCCCGAACTGTGGAGTGCTATAAGACTATGATGGAGAATGAGAAATTTATGTGTGAAAAGTCTTGTGGGATAAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCATTTTCTAATTCAAATCATTATAATACCTTTAGTGGGGATTGGGTTCCTCACTTTTGTTCCATGCCATGTGGAAAGAAGCTAAGGTGTGGCCAGCATGTGTGTGAATGTCTGTGTCACAGTGGTCATTGTCCACCTTGTTTCCAAACAATCTTTAATGAATTGGCTTGTGCTTGTGGTAGGACTTCAATACCTCCTCCTCTACCATGTGGTACACCGCCTCCCTCATGTCAGCTTCCATGCTCAGTTCCTCAGCCATGTGGTCATTCAGTCTCACACAGTTGCCATTTTGGAGACTGTCCTCCTTGTTCAGTGCCTGTTGCAAAAGAATGTATTGGCGGGCATGTAGTTCTTAGAAACATACCTTGTGGTTCGAAGGATATTAGATGCAATCATCCCTGTGGGAAGACCAGGCAGTGTGGTTTACATGCATGTGGCAGAACATGTCACCCTCCACCTTGTGATAATCTATCTGGTGTTGTGCAAGGTTTCAAAGCACCATGTGGCCAAACATGTGGTGCTCCAAGAAGAAGCTGCAGGCACACATGTATGGCTCCTTGTCACCCTTCATCTCCATGCCCAGATATAAGGTGTGAATTCCCTGTTACAATCACTTGCTCTTGTGGCCGTATAACGGCAAATGTTCCTTGTGATGTTGGTGGTAGCAGTAGCAATTATAATGCTGATGCCATACATGAAGCTTCCATTATTCAAACATTGCCTGTACCTCTTCAACCAGTTGATGCAAATGGCAAGAAAGTTCCCCTAGGACAAAGAAAGCTGATATGTGATGATGAATGTTCTAAGCTGGAACGCAAAAGGGTTCTCGCGGATGCTTTTGACATTACTGCTCCAAATCTGGACTCTCTCCATTTTGGTGATAACTCTCTTTCTTCTGAATTGCTTTTAGATTTTTTCAGGCGTGAGCCAAAATGGGTTTTAGCTGTTGAGGAGAGATGCAAAATTTTAGTACTTGGCAAGACTAGAGGAACAGGAACTACACATGGTTTAAAAGTCCACATCTTTTGTCCCATGCTGAAGGAAAAAAGAGATGCAGTGAGGTTGATTGCTGATAGATGGAAGCTTGCAATCACTGCTGCCGGCTGGGAGCCAAAGCGATTTATTGTAATTTCTGTTACCCCAAAATCAAAGGCCCCGGCTCGTGTGATAGGGGTTAAGGGTACTACAACTTTAAATGTGCCTCTTCCTCCTGTATTTGATCCGTTGGTTGACATGGACCTGCGACTTGTTGTCTCATTTCCAGACTTACCAAGGGATACTGAAATTAATTCCTTGGTTTTGAGGTTTGGTGGCGAGTGTGAGCTTGTTTGGTTGAACGACAAGAATGCTTTGGCTGTTTTTCATGATCCTGCTCGAGCTGCAACTGCGATGAGGAGGTTGGATTATGCAACAGTTTATCAGGGAGCTGTTTTGGTTGCCCCGAATGCTGGGGCATTGGTGGCATCTTCAGCTACCAATGCCTGGGGAGGAGCTGGGGCAATGAAAGGAGGAGGAGCGCTGCCAGCATTGAAAGGTAACTCATGGAAAAAGGCTGTGGCTCAAGACTCTGGTTGGGAAGATTCTTGGGGTGGTGAAGAGTGGATTGCTGGTTCTGTGAATATCCAGCCATCTGTTTGGAAAAAGGAAGCACCTCTGGCTGCTTCTTTGAATCGTTGGAATGTCTTGGAGCAGGAATCGAGTTCAAGTTTGTCGTCTACAACTGTTAGAGCTGAAGTTTCTGGGAAGAAAACTGAAAATGCTGGTGAAGAAGGTGGCTCAAAGGAAGAGGAAAAGTTGGATGCAGCTTCTGAAGTAGTTGATGATTGGGAGAAGGCTTATGAATGA 3222 0.464 MTSSSVKNEDEEKGSLAGSSKTEIFRDSAKHSEDYRDMSSQIRRERREWSRVPPQGATRQEWVPRGAAAAAASTNVAQPSNLHSNNNADAGSSNLGVAVAAPSVSRSRSNNHGNDVGSSNQGVAVAALPVSRGRSNNHGNDAGFSNQGVAVAALPVSHGRSNNHGNDAGPSNQGVAVASPPVSHGRSNNPGNGAGSSNQGLAVAAPPVNRGRSKNHGKDSVSSNQGVAVAALGSRGRSNNHGSHWMEMEKDKGSRSGSQVEKGLRVGVRDSSLPQLVQEIQEKLMKGTVECMICYEMVQRSVPLAVSWLSVCEIYLFKVIFSCSSYCLKILGCGNHVCSEICHPGSCVECELLPSRVKTCCCGKTRLENERQSCLDPIPTCSKVCGKLLHCGMHSCKEACHVGECPPCLVEVSQKCCCGSTSRTVECYKTMMENEKFMCEKSCGIKKNCGRHRCSERCCPFSNSNHYNTFSGDWVPHFCSMPCGKKLRCGQHVCECLCHSGHCPPCFQTIFNELACACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSVSHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNHPCGKTRQCGLHACGRTCHPPPCDNLSGVVQGFKAPCGQTCGAPRRSCRHTCMAPCHPSSPCPDIRCEFPVTITCSCGRITANVPCDVGGSSSNYNADAIHEASIIQTLPVPLQPVDANGKKVPLGQRKLICDDECSKLERKRVLADAFDITAPNLDSLHFGDNSLSSELLLDFFRREPKWVLAVEERCKILVLGKTRGTGTTHGLKVHIFCPMLKEKRDAVRLIADRWKLAITAAGWEPKRFIVISVTPKSKAPARVIGVKGTTTLNVPLPPVFDPLVDMDLRLVVSFPDLPRDTEINSLVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDYATVYQGAVLVAPNAGALVASSATNAWGGAGAMKGGGALPALKGNSWKKAVAQDSGWEDSWGGEEWIAGSVNIQPSVWKKEAPLAASLNRWNVLEQESSSSLSSTTVRAEVSGKKTENAGEEGGSKEEEKLDAASEVVDDWEKAYE* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0889 1073 CDD NF-X1-zinc-finger 589 647 - -
Gso7g0889 1073 Pfam NF-X1 type zinc finger 489 506 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 Pfam NF-X1 type zinc finger 333 350 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 Pfam NF-X1 type zinc finger 449 460 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 Pfam NF-X1 type zinc finger 546 563 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 Pfam NF-X1 type zinc finger 599 614 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 Pfam NF-X1 type zinc finger 391 408 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 Pfam NF-X1 type zinc finger 631 656 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 CDD NF-X1-zinc-finger 323 368 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 24 52 - -
Gso7g0889 1073 CDD NF-X1-zinc-finger 479 522 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 242 258 - -
Gso7g0889 1073 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 319 1046 IPR034078 GO:0003700
Gso7g0889 1073 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 266 306 IPR034078 GO:0003700
Gso7g0889 1073 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 319 1046 - -
Gso7g0889 1073 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 266 306 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 73 122 - -
Gso7g0889 1073 CDD NF-X1-zinc-finger 627 676 - -
Gso7g0889 1073 SMART znfxneu3 333 352 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 SMART znfxneu3 546 564 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 SMART znfxneu3 489 508 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 SMART znfxneu3 599 629 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 SMART znfxneu3 638 659 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 SMART znfxneu3 391 410 IPR000967 GO:0005634|GO:0008270
Gso7g0889 1073 MobiDBLite consensus disorder prediction 1 122 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 1041 1073 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 1023 1039 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 159 203 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 157 259 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 1 17 - -
Gso7g0889 1073 CDD NF-X1-zinc-finger 536 584 - -
Gso7g0889 1073 MobiDBLite consensus disorder prediction 1023 1073 - -
Gso7g0889 1073 CDD NF-X1-zinc-finger 381 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0889 Gso-Chr7 10205670 10210990 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Gso7g0889 zf-NF-X1 18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0889 K12236 - gmx:100789059 1560.81