LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso7g0858	ATGAAGAACCTTCTTAAGAAGCTTCATATCATGTCTAACCGATCAGAGAATGAACAAGGGTCTTGTTCGTCAAAGGGAAACAAGTCCAATCTTGGTTCATCTTCATCTTCCAACAAGAAGGTTTTGGGCTCAAAGTCCCCTCAAAGTTCTGGGCTCTCCAGTTGGTTGCATTCAGTTGCTAATAGGCAGAGTGCTGGTCCTCCTCCATCTCTGACCCAGGCAAGGGGCGAGAGAATGGAGCCATCTGATGCAGTGAGCAGTGGTGGTTTTGATGCTGTGTCAGATTCAGCTAGGCTTGATTCAGGGTCTAGTGCTTCCAGGGATCCTGAAGTGGAGGAAGAGTATCAGATACAACTGGCTTTGGAGCTGAGTGCAAAGGAGGATCCTGAGGCCGCGCAAATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGGTTACACACCAGCTGAAGTTGTGGCCTACCGGTATTGGAATTACAATGCTCTTGGTTATGATGACAAGACCTTAGATGGTTTCTATGATCTGTATGGGAGCTTAACTGAGTCAACCCCTGCAAGAATGCCTTCCCTTGTAGATCTGCAACTGCAAGGAACACCAATCTCAGGTAGTGGTACATGGGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCTAATTTGTTGAAACTTGTGCAAAAGGCCCAGGAGTTGACTGACAAATCAAGTCCAGATTTTGAAGTAGTTATAGATAGCAATTTGGTGCGCAAGCTTGCAATATTTGTGGCTGACTATATGGGTGGACCCGTTGGAGATCCTGAAAGCATGACAAGAGCATGGAGGAGTCTTAGTTACAGTCTGAAAGCAACCCTTGGTAGCATGGTTTTGCCACTTGGATCTCTAACTATTGGATTGGCTCGGCATCGTGCATTGTTATTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGTCGGTTGGTGAAGGGGCTGCAATATACAGGCTCTGATGATGTGGCGATAAACTTTGTCAAGATTGATGATGGAAGGGAGTATATTGTTGACCTAATGGCAGATCCTGGAACACTTATTCCTTCTGATGCAACTGGATCACATATAGACTATGATGAATCTTCGTATGTGGCCAGTCCTTCATCAAGAGACCTTGATTCCTCGCATGTAGCATCATCCAGCAGTGGTGTTGGAAGTTCATATGAAGAAACTTCAGATTTGGGGATGTTGGACAAAGGAAACAGATCAAAACATTTTTGCCATACAGGGAAAGAATATGATGTAAGCAGGCCCTCCACAGGAAATGAAGGATCAATGAGACCCTTAAATGAATTTAAAAGTCCTTACAATGTTGAGAAGATCACGGGGCAGGAAGCTCCTGGCAGACCTAATCATCCACATGTACATGCAAGATCTCCTTGGACTGAAGGGATAAGTTCTCCTGCAGTACGTAGAATGAAAGTCAAAGATGTTTCTCTATACATGATTGATGCTGCCAAGGAGAACCCTCACTTAGCCCAGAAACTTCATGATGTTTTACTTGAAAGTGGTGTAGTTGCTCCTCCAAATCTATTTTCTGAAATTTATGATGAGGAATTAGGTTCCTCAACTGAGGCCAACTTACTAACTGAAGAAAAAGATGAACATAAACAGGGAAGTGGACTGCAAGAAGCTGAGATTTATGGAAATCTTAGTCCTGCTCAAATTTTGCCTCCTAGAGCTCTTCCCAAAGCAAGTTCTAGCAGTCAGCTGGAGCATTCAAAACCTGTAGAAGGTTTAGGAATCAACCTTCCTCTTCATACGAGGGAAGCAACTGGACAGCATATACCAACTCAGGTAAAATATGGGCAAAATGTCCCAGTTGCTGCCGCTGCCGCAGCTGCTGCTGCTGTTGTTGCATCTTCTATGGTAGTTGCAGTGGCAAAATCTAGCATTGACTCAAACATAGAGCTTCCAGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTAGTAACTGCTGCTGTCAGTAGACAGTACGAACAGGGCAGTCGAAGTGATGGAGATACAGACAGTGCTGGTTATGACCTGAAGGGTAGTGGTGATGGGGAGCATATAGCTTTAGGAGCAAATTCAGAAGGTGACAGAAGATCTGATAGGTCAGTAGTAAGTAATGATAGCACAAAATCTGATTCTGCATTAGATGATCATGAAGTCGCTGAGGTTGACATTCCATGGGAGGAAATCACGCTCGGTGAGCGTATTGGACTTGGGTCGTATGGGGAGGTGTACCATGGTGAATGGCATGGAACTGAAATTGCTGTAAAGAGGTTTCTAGATCAAGATATATCTGGTGAATCACTTGAAGAATTTAAAACTGAGGTCAGAATAATGAAAAGATTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGAAGTTTGTATAGATTACTTCACAGACCAAACAGTCAATTAGATGAGCGAAGGCGTTTGAAGATGGCCCTTGATACTGCTCGAGGAATGAACTATTTGCACAACTGCACTCCTGTGGTAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTCGTTGACAAAAATTGGGTTGTGAAGGTATGTGATTTTGGCTTATCGCGTATGAAGCATAGCACATTCCTTTCTTCCAGATCCACTGCAGGAACAGCCGAGTGGATGGCTCCTGAGGTGCTGAGAAATGAACCTTCAAATGAGAAGTGTGATGTTTATAGCTTTGGGGTCATATTATGGGAGCTCTCTACTTTGCAGCAACCGTGGGGAGGGATGAATCCGATGCAAGTTGTTGGTGCTGTGGGCTTCCAGCATCGACGTCTTGACATTCCAGATGATATGGACCCGGCAATTGCAGATATTATCAGGAAATGCTGGCAAACAGATCCAAAGTTGAGACCTACATTTGCTGAAATATTGGCAGCTCTGAAGCCGTTGCAGAAGTCAGTTATTGGTTCTCAAGTGCCTCGACCAAGTGCATCGGGGAAGCATGAGAAGGTTCAGTCATTGCGTGTTGCAGAAGACTCAGCAAGATAG	3081	0.4456	MKNLLKKLHIMSNRSENEQGSCSSKGNKSNLGSSSSSNKKVLGSKSPQSSGLSSWLHSVANRQSAGPPPSLTQARGERMEPSDAVSSGGFDAVSDSARLDSGSSASRDPEVEEEYQIQLALELSAKEDPEAAQIEAVKQISLGSCDPGYTPAEVVAYRYWNYNALGYDDKTLDGFYDLYGSLTESTPARMPSLVDLQLQGTPISGSGTWEAVLVNRAADSNLLKLVQKAQELTDKSSPDFEVVIDSNLVRKLAIFVADYMGGPVGDPESMTRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSDDVAINFVKIDDGREYIVDLMADPGTLIPSDATGSHIDYDESSYVASPSSRDLDSSHVASSSSGVGSSYEETSDLGMLDKGNRSKHFCHTGKEYDVSRPSTGNEGSMRPLNEFKSPYNVEKITGQEAPGRPNHPHVHARSPWTEGISSPAVRRMKVKDVSLYMIDAAKENPHLAQKLHDVLLESGVVAPPNLFSEIYDEELGSSTEANLLTEEKDEHKQGSGLQEAEIYGNLSPAQILPPRALPKASSSSQLEHSKPVEGLGINLPLHTREATGQHIPTQVKYGQNVPVAAAAAAAAAVVASSMVVAVAKSSIDSNIELPVAAAATATAAAVVTAAVSRQYEQGSRSDGDTDSAGYDLKGSGDGEHIALGANSEGDRRSDRSVVSNDSTKSDSALDDHEVAEVDIPWEEITLGERIGLGSYGEVYHGEWHGTEIAVKRFLDQDISGESLEEFKTEVRIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNSQLDERRRLKMALDTARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDMDPAIADIIRKCWQTDPKLRPTFAEILAALKPLQKSVIGSQVPRPSASGKHEKVQSLRVAEDSAR*	1027

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso7g0858	1026	MobiDBLite	consensus disorder prediction	375	399	-	-
	Gso7g0858	1026	ProSiteProfiles	Protein kinase domain profile.	739	995	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso7g0858	1026	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	1	1024	-	-
	Gso7g0858	1026	Gene3D	Phosphorylase Kinase; domain 1	732	816	-	-
	Gso7g0858	1026	MobiDBLite	consensus disorder prediction	1000	1026	-	-
	Gso7g0858	1026	MobiDBLite	consensus disorder prediction	14	70	-	-
	Gso7g0858	1026	CDD	STKc_MAP3K-like	745	991	-	-
	Gso7g0858	1026	Gene3D	Transferase(Phosphotransferase) domain 1	818	1002	-	-
	Gso7g0858	1026	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	858	870	IPR008271	GO:0004672\|GO:0006468
	Gso7g0858	1026	SMART	serkin_6	739	994	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso7g0858	Gso-Chr7	9726365	9739560	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso7g0858	1	1009	MAP Kinase Kinase Kinase	AT1G73660	62.281	0.0	1134

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Gso7g0858		PK_Tyr_Ser-Thr	2.1e-67	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso7g0858	-		-	gmx:100816332	1907.11

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso7g0858	7	9726365	9739560	Gso9g1457	9	38669114	38682256	GST
	Gso8g0442	8	4125126	4133651	Gso7g0858	7	9726365	9739560	PCT
	Gso7g0858	7	9726365	9739560	Gso8g0442	8	4125126	4133651	PCT

Showing 1 to 3 of 3 entries