LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso7g0851	ATGGGCATCAAGGATCTTCTGAGGTTCATGAAACCTTACATTGAACCTGTCCACATCAAGAAGTACGCTGGAAAACGCGTGGGTATTGATGCGTATTCATGGCTTCACAAAGGGGCTTATTCGTGTAGTATGGAGCTTTGTCTGGATTCTAATAGTGAAAGGAAGTTGCGGTACATTGACTATTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCAGTTGTTGTTTTTGATGGTTGCAATGTTCCTTGCAAGGCCGCAACTGAGGAAGAGAGAAACAGGAAAAGAAGGGCTAATCGTGAATTGGCAATGGCGAAGCTCAAAGAAGGGAATGTTGGTGCAGCTTCAGAGCTCTTCCAGAGAGCTGTGAGTATTACTCCCGTTATGGCACATAAGCTAATTCAGACCCTAAAATCAGAGAAGATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACATGTCTCAGCTTGGAGTAGAAAATGGTGGAGTTGCAGCGGTGATCACAGAAGATAGTGATCTAATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGACCGTCATGGGAATGGTGAAAGAATTGAGTTAGAGAAAGTGTTTTCTGCTGAGTCTGGTAGACCTTCATTTCGGAGTTTCAATATGAAACTCCTCACAGGTATGTGCGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTAGTTTCCAAGTATCGGAACCTAGATCGTATCTTGTCTGTTCTTAAGATCGAGAAAGGTGACCAAATGCCTGAAGATTATGCCAAATCCTTTCAAGAGGCTGTTGCGGTTTTTGAGCATGCTCAAATATATGATGTCAATTCTAAAGAGCTCAAGCACATGAATCCTCTTCCAGAAAATTTTCTTGGGTCACTTGATGGAAAATTTGATTTCTTGGGACCAGAAATTCCTCCATCAATAGTCACAGCAATAGCTGAAGGAAACTTGAATCCGTCAACTAAGAAAGCCTTTGATAAGTCTGAATGTTCTAGATTTCCTCTACAGCCCATTGATCTCCAAAGCATTGATCAAGTCCGGAAAGCTGAAGTTCCTGCACCATCTAGACAGGGGAGTAGCTTTTCAATCATCACCTCTCATTACACCAGAGAAAGTAATGCAGTGGCAAGGCTTTCAGATAAAGATAAGTATTCCAATGAAGCATTAGCACTTCATAAACTAATCATGCCATTGGGAAATAATGGAACAGAGGAAAAGACTATTATATCTGATTTCACTCCTTTGAAGTTTCCTGACAACAATCCATTCAGGATAAGAAAAAATGAGGGAACATATCAGACAAAGGACACTGTACAAAAAGTTTCTTTTGCCAGCAACATGGGATATACCGACTTATGCATGTCTCCAGATGACTTTGAAGAAAAGGGGTCTGAGAATCTCTCAAGGAAAAGGAAATTTCAGAACTTTTGCTCAGATAAAGTTGAAGCCACTGATGAACTGTTTTCAGGAGTGACTGAAGTAGAAAAATCTGATATTCCATGCATGGCTGTGGAATCCCCCGAAAGTATAAATTCTGATCAGACTAAGAAAATTGCCGATTTGAAAGGAAGAAGTGAAAGTAATAAGCAATCCAAGAGAAGCAACAGCAAGAAAACGGGGAGTAACAACATAACTCTTTTGAGTTTCTTTTCTAGAGTGTAA	1728	0.4034	MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSNSERKLRYIDYFMHRVNLLRFYKITPVVVFDGCNVPCKAATEEERNRKRRANRELAMAKLKEGNVGAASELFQRAVSITPVMAHKLIQTLKSEKIEFVVAPYEADAQLAYMSQLGVENGGVAAVITEDSDLIAYGCPAIIFKMDRHGNGERIELEKVFSAESGRPSFRSFNMKLLTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKIEKGDQMPEDYAKSFQEAVAVFEHAQIYDVNSKELKHMNPLPENFLGSLDGKFDFLGPEIPPSIVTAIAEGNLNPSTKKAFDKSECSRFPLQPIDLQSIDQVRKAEVPAPSRQGSSFSIITSHYTRESNAVARLSDKDKYSNEALALHKLIMPLGNNGTEEKTIISDFTPLKFPDNNPFRIRKNEGTYQTKDTVQKVSFASNMGYTDLCMSPDDFEEKGSENLSRKRKFQNFCSDKVEATDELFSGVTEVEKSDIPCMAVESPESINSDQTKKIADLKGRSESNKQSKRSNSKKTGSNNITLLSFFSRV*	576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso7g0851	575	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	567	IPR006084	-
	Gso7g0851	575	Gene3D	-	218	291	-	-
	Gso7g0851	575	PANTHER	5'-3' EXONUCLEASE FAMILY PROTEIN	1	567	-	-
	Gso7g0851	575	MobiDBLite	consensus disorder prediction	537	555	-	-
	Gso7g0851	575	CDD	PIN_EXO1	1	208	IPR044752	GO:0046872
	Gso7g0851	575	SMART	xpgn3	1	102	IPR006085	GO:0004518
	Gso7g0851	575	MobiDBLite	consensus disorder prediction	525	563	-	-
	Gso7g0851	575	SUPERFAMILY	PIN domain-like	2	235	IPR029060	-
	Gso7g0851	575	SMART	xpgineu	141	213	IPR006086	GO:0004518
	Gso7g0851	575	CDD	H3TH_FEN1-like	228	295	-	-
	Gso7g0851	575	Coils	Coil	91	111	-	-
	Gso7g0851	575	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
	Gso7g0851	575	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	76	95	IPR006084	-
	Gso7g0851	575	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	140	157	IPR006084	-
	Gso7g0851	575	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	225	240	IPR006084	-
	Gso7g0851	575	Pfam	XPG N-terminal domain	1	100	IPR006085	GO:0004518
	Gso7g0851	575	Gene3D	-	1	212	-	-
	Gso7g0851	575	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	220	349	IPR036279	-
	Gso7g0851	575	Pfam	XPG I-region	144	235	IPR006086	GO:0004518

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso7g0851	Gso-Chr7	9631893	9636503	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso7g0851	1	312	Core DNA Replication Machinery Family	AT5G26680	24.000	3.09e-12	67.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso7g0851	K10746		-	gmx:100817932	1132.47