Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0848 ATGGCAGAACTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAAGTCCTTGGTGAGGGTACATACGGTGTCGTTTACAAAGCCATTGATACCAAGACAGGGCAGACGGTTGCAATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACGGCTCTCAGAGAAATTAAACTGCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTTCCACATAAAGGGAATTTGCATCTTGTGTTTGAGTTCATGGAGACGGACCTCGAAGCTGTTATACGGGACAGGAATATTGTTCTTTCACCTAGTGATATAAAATCTTACCTTCAGATGACATTAAAAGGCCTTGCTATTTGCCACAAGAAATGGGTGTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCCAACGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGGTATTTGGAAGCCCAGATCGCAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGCACCAAGCAGTATGGTCCTGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTCCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTGCAGCATTTGGAACTCCATCTGCTTCTCAGTGGCCTGATATGATTTTCCTTCCTGATTATGTTGAATATCAACATGTTCCTGCCCCACCTTTGCGTTCTTTATTTCCAATGGCTAGTGACGATGCCTTAGATTTGTTGTCAAAGATGTTTACTTATGATCCAAAGGCTAGAATATCTGTACCGCAGGCATTAGAGCACAGGTACTTCTCATCTGCGCCTCTGCCCACAGATCCTGTTAAGCTTTCAAGACCTGCTCCTAAGAAGGAATCTAAGGTTTCAGATGTAATTTCAAACGAAGGTCCTACTGTCTTGTCACCTCCAAGAAAGTCCAGGAGAGTAATGCCAGGGCGTGATGGGTCTGAAGGAAATTCTTTGCAAGGAGATAAGTTTGATGACAGTGTTGTTAGTGTCAGACAGGCAGCTGGTGATAATATGGGAAAGAATGAGCCAGCTCCAATGTCACTAGATTTTTCTCTTTTTGGATTAAAACCTCCAAATAGACCTACAATTACCAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAGTTCTAG 1236 0.4256 MAELDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPSDIKSYLQMTLKGLAICHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSASQWPDMIFLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPKARISVPQALEHRYFSSAPLPTDPVKLSRPAPKKESKVSDVISNEGPTVLSPPRKSRRVMPGRDGSEGNSLQGDKFDDSVVSVRQAAGDNMGKNEPAPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEF* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0848 411 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0848 411 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Gso7g0848 411 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Gso7g0848 411 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0848 411 MobiDBLite consensus disorder prediction 300 354 - -
Gso7g0848 411 CDD STKc_CDK7 13 306 IPR037770 GO:0005675|GO:0008353|GO:0070985
Gso7g0848 411 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0848 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gso7g0848 411 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Gso7g0848 411 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Gso7g0848 411 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Gso7g0848 411 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0848 Gso-Chr7 9594491 9600021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0848 8 411 Core Cell Cycle Gene Families AT1G73690 76.980 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Gso7g0848 Pkinase 8.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0848 K02202 - gmx:100813673 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0848 7 9594491 9600021 Gso7g0848 7 9594491 9600021 ECH
Gso7g0848 7 9594491 9600021 Gso9g1464 9 38791866 38797097 GST
Gso5g2072 5 43710230 43715907 Gso7g0848 7 9594491 9600021 PCT
Gso7g0848 7 9594491 9600021 Gso5g2072 5 43710230 43715907 PCT