Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0809 ATGTCAATACTCAATAATCATATCCCCATGCTCCTTACGTCCCTACGCACCATCTCTTGGTTATTGTTAACCACTTTGCCTCAGTCTCAGTCTCAAACACCCGCTGATCACAGTTTTTCTGTTTGTAATGAGCAGTCATACAACTGCGGAACATTGTCCAACATCTCCTATCCTTTCTGGGGACTCAACCGATCCCGTCAATGTGGCCGCGGTGGTGACGCATTCAAGCTCACATGCCATGATGATAAGACTACTTCAATCCGAATTGCCACTCAAAATTTCACAGTGAAGGACATCAACATCACCGCTCAAACCATGATATTGGTGCGAGCAGACCTTGCCCTCAACGTTTGTTCTCCACAATTTGGGGACACTTATTTGAGTCCTAGTCTGTTCCAGTATGGTTCATCCGTGTACAACATCACCATATTCTACAATTGCTCCTCCACATCCAATATAGATACCAGTCTTGCGGCATTCAAGTGCGGATATGAGAATACTCTCTTTACTGATGGTGTAGAATATGAGCTGTTGAGAACATTTCCATGGCTTGAGAGATGCGGGCGACAAGTCCAAGTGCCGCTAGATGTTGTTTATGATAGTAACGGTGGGCGTGATTTTCTGAAACAAGCTTTCACTAGCGGCTTTCTGGTCAACTATACTGTTCTCAACACTGTTACTGTTGACAATAGTAAAGTTAATTTGACAAGGAAAATCATCGTAGCTGTTGGTGTGGTAATGGGAGGATTCATAACATGCATCGTAATAATTTACTGTTGTAGCTGTAAATATATGTCATCAACACAAGTAAAATTTTGGTTGACGGGAAAGAATGACCTAGATATCGAAGCATTCTTAAAAGATCGTGGAACTCTAGCACAAAAGAGATATAAATTTTCAGAAGTCAAGAAAATGACCAACTCCTTCAAAGTTAAACTGGGTGAAGGTGGCTTTGGTGCTGTATACAAAGGAGAGCTACTCAGTGGTTGCCCTGTGGCCGTAAAAATATTAAATTCATCTAAAGGAAATGGTGAAGGCTTTATCAATGAGGTTTCTAGCATTAGTAGAACTGCTCATGTTAATGTTGTCACACTTTTTGGATTCTGCTTGGAAGGCAGCAAGAAAGCTCTCATCTATGAATTTATGCATAATGGTTCCCTTGACAAGTTTATTTACAACAAGGGACTTGAAGCTACTGCATCATTGAGTTGGGATAATTTGTGGCAAATTTCCTTAGGGATAGCCCGAGGACTAGAGTATTTGCATAGGGGATGCAACACTCGTATCTTACATTTTGATATAAAACCACATAACATTCTTCTGGACGAGAACTTTTGCCCCAAGATATCAGATTTTGGGCTTGCAAAGCTTTGTCCTAGGAAAGAGAGCATTATTTCCATGTCATATGCTAGAGGGACAGTAGGATATGTTGCTCCAGAAGTGTGCAACAAACACTTTGGTGGAATTTCACACAAATCTGATGTCTACAGCTATGGAATGATGCTGCTTGAAATGGTGGGAGTGAAGAAGAATATTAATGCAGAAGTCAGTCAGACAAGTGAGTACTTCCCAGATTGGATATATAGCAGGCTAGAGCAGGGTGGAGATTTGACAACTGATGGGGAGATAGCCACAGAAGAAAAAGAGATGGCAAGGAGAATGACTATAGTGGGCTTATGGTGTGTTCAAACAATTCCACAAGATAGACCTACAATGAGTAGAGTAATAGATATGCTAGAAGGCAGCATGAATTCCCTAGAAATGCCTCCAAAACCTGTTCTTTCTTCTCCAGCTAGATCGGTGCCAGAATTTACCACTAGTTCTTTGCAATCTGGGTAG 1839 0.4133 MSILNNHIPMLLTSLRTISWLLLTTLPQSQSQTPADHSFSVCNEQSYNCGTLSNISYPFWGLNRSRQCGRGGDAFKLTCHDDKTTSIRIATQNFTVKDINITAQTMILVRADLALNVCSPQFGDTYLSPSLFQYGSSVYNITIFYNCSSTSNIDTSLAAFKCGYENTLFTDGVEYELLRTFPWLERCGRQVQVPLDVVYDSNGGRDFLKQAFTSGFLVNYTVLNTVTVDNSKVNLTRKIIVAVGVVMGGFITCIVIIYCCSCKYMSSTQVKFWLTGKNDLDIEAFLKDRGTLAQKRYKFSEVKKMTNSFKVKLGEGGFGAVYKGELLSGCPVAVKILNSSKGNGEGFINEVSSISRTAHVNVVTLFGFCLEGSKKALIYEFMHNGSLDKFIYNKGLEATASLSWDNLWQISLGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESIISMSYARGTVGYVAPEVCNKHFGGISHKSDVYSYGMMLLEMVGVKKNINAEVSQTSEYFPDWIYSRLEQGGDLTTDGEIATEEKEMARRMTIVGLWCVQTIPQDRPTMSRVIDMLEGSMNSLEMPPKPVLSSPARSVPEFTTSSLQSG* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0809 612 Pfam Protein tyrosine and serine/threonine kinase 309 579 IPR001245 GO:0004672|GO:0006468
Gso7g0809 612 Gene3D Transferase(Phosphotransferase) domain 1 382 589 - -
Gso7g0809 612 Gene3D Phosphorylase Kinase; domain 1 285 381 - -
Gso7g0809 612 Pfam Wall-associated receptor kinase galacturonan-binding 42 109 IPR025287 GO:0030247
Gso7g0809 612 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 236 608 - -
Gso7g0809 612 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 8 220 - -
Gso7g0809 612 SMART serkin_6 307 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0809 612 SUPERFAMILY Protein kinase-like (PK-like) 295 580 IPR011009 -
Gso7g0809 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Gso7g0809 612 MobiDBLite consensus disorder prediction 587 612 - -
Gso7g0809 612 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Gso7g0809 612 PANTHER RUST RESISTANCE KINASE LR10-RELATED 236 608 IPR045874 GO:0004672
Gso7g0809 612 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 220 IPR045874 GO:0004672
Gso7g0809 612 ProSiteProfiles Protein kinase domain profile. 307 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0809 Gso-Chr7 8901504 8907107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0809 46 608 Receptor kinase-like Gene Family AT5G38260 38.602 2.45e-136 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso7g0809 PK_Tyr_Ser-Thr 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0809 - - gmx:100793451 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0374 8 3533530 3537520 Gso7g0809 7 8901504 8907107 PCT
Gso7g0809 7 8901504 8907107 Gso8g0375 8 3540246 3542997 PCT