Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0804 ATGGCGACGCCGCTGACGGGGCTGAACGGCGTCGGCGGCGGCGGCGGAGTAGCGGTGCTGGCGAATCCTGTGAGCAAGGTGGATTCCTCCGCCAATGGCGGCGGCGGATTCGGCCGGTCGCTGTCGGAGTCGCCAATTCTGATATTCTCGTTCTTCCACAAGGCGATTCGGAACGAGCTCGACGCGCTGCACCGATTGGCGATGGCGTTCGCCACCGGAAACTGCTCCGACATCCAGCCCCTCTTCCAACGCTACCATTTCCTCACATCGATGTACAGACACCATTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTAGATATACGAGTGAAGAATGTAGCACAAACATACTCCCTCGAACACCAGGGTGAAAGTGATCTTTTTGATCATCTATTTGAGCTGTTAAACTCTTCCATCCATAATGACGAAAGTTTCCCAAAGGAGTTAGCATCCTGCACAGGAGCTCTGCAGACGTCTGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCTCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTCTGCAGTATTCCTGTGAATATGATGACAGAATTTCTTCCATGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGGGAAGTAGTGCTAACACAGTTGAAAATTGTTTAGATCATTCTCAGGTGCGATGTAGTCTTAATCCTTTAACCCATCAGAATGGGAAAATAAAATGTGCATGTGAGTCCACAGCAACAGGGAAAAGGAAATATTCTGGATCTATTATAGATGTTTCTGATACCATGAGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAATGAGATAGCAGCACAGACTAGAAAGATACAACTCTCTGGAGATTTTACTAACCTGTCAGCTTTCAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAAAGTTTTCTTTCTTTCAAGAACATGCTGAAGAAGAAAGCCAATTTAATGAGTTCCGGTCTTTGATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATATTGGAAACAATACAGAGACATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCTTTGAAATTGATTGAGCGTGTCCTGCCATGGTTGATTCGATCATTAACTGAAGATGAAGCACAGATGTTTTTGAAAAACATGCAATCGACAGCTCCAGCAATAGATTCTGCTTTAGTCACACTTTTCTGTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTTTGTGTTTGTCTTCAAGTGTATCAGGTTGCTGTCCGGCCCAGAGATTTACTGATATTGAAGAAAATACTGTCCATTCTTCCTGTACACCTGCTTCTGCATTGTCTGGTAGAGTTTGCTCAGTATTAGCTGAATCAGATGGGACCCAACAAAGATCAGTCAAGAGAAACATATCGGAGGTGCACAAGAATGAAGACGTCTCTAAAACTTCAGAAAGTGAAAGTTTTCAGAAACAATGTTGTAGTGCCCAGTCTTGTTGTGTGCCAGCTTTAGGAGTCAACAAGAATAATTTGGGGCTGGGTTCACTCTCTACAACCAAGTCCTTACGCTCTTTGTCTTTCACAGCTTCTGCCCCATCCCTTAATTCTAGTCTTTTCATATGGGAAACAGACAACAGTTCATGTGAAGTTGGTTCTACAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTATTTAGACATTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTCCGGCTTTTGTGGGGTTTATACAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCTGCCCTCGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCTTACACGCTGGATCATAAGCAAGAAGAAAAATTATTTGAAGATATTTCATGCGTTCTTTCTGAGCTTTCTGTCCTTCATGAAAACTTGCAAAGGGCCCATATGTCAGTGGATTTAAGTGAAAATGATTTTGGAATTTCTGATGCCAATGATGACGATAATATCAAAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATTAGAGTGACCCTGGATCAACATATTTTTAGGGAAGAGCTCGAGCTCTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACGGGTGCTGAAGTTCTCCAATCAATGTTACCGTGGGTAACTTCTGCACTTACACAGGATGAACAAAACAAAATGATGGACACATGGAAACAGGCAACTAAAAACACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAAGTCCTGTATCTACATCACAGACAGAAGCGTCAGAGCGTAGCACTTCTCAAAGAGGTGGTGATTATCAAGAAAGCTTGAACCTGAATGAGCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGTATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAGGTTTATCGCGACTCAACTCTTGATCCAAGGAGAAAGGCATACCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCTTCCCAACAGAAGTTACCTAAGGCTCCATCTGGGGAGTCTAGTAAACAAATAGAAGGATGCTCACCATCATTTCGAGACCCAGAGAAACAAATATTTGGCTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCTTGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCAGTGCCTAACTATACAGCCAGTTGGGCCGATATGCATGTCACCTTCATGTAATGGACTTACAATGGCAAAGTATTATTGCAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTATCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAGCATCTCACAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGCGACGACTTGTTCACATCAAGTGCAACAGTGAGAGCTTTACCTTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGTAGCCACTACACATGTCCAATCTGCAGCAAATCACTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGATATACTCTGCCATGACTGTGATAGAAAGGGCACTTCACGCTTCCACTGGTTATATCACAAATGTGGATCTTGTGGCTCATACAATACCCGGGTAATCAAGAGTGAGGCAGCAAATTCTAGCTGCCTTTAG 3729 0.421 MATPLTGLNGVGGGGGVAVLANPVSKVDSSANGGGGFGRSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNCSDIQPLFQRYHFLTSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHQGESDLFDHLFELLNSSIHNDESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVVFTWMEGGSSANTVENCLDHSQVRCSLNPLTHQNGKIKCACESTATGKRKYSGSIIDVSDTMRTHPIDEILLWHNAIKKELNEIAAQTRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFFQEHAEEESQFNEFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLIRSLTEDEAQMFLKNMQSTAPAIDSALVTLFCGWACKARKDGLCLSSSVSGCCPAQRFTDIEENTVHSSCTPASALSGRVCSVLAESDGTQQRSVKRNISEVHKNEDVSKTSESESFQKQCCSAQSCCVPALGVNKNNLGLGSLSTTKSLRSLSFTASAPSLNSSLFIWETDNSSCEVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLCDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHENLQRAHMSVDLSENDFGISDANDDDNIKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLKESPVSTSQTEASERSTSQRGGDYQESLNLNEQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIASQQKLPKAPSGESSKQIEGCSPSFRDPEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATLEMMCMQCLTIQPVGPICMSPSCNGLTMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKGTSRFHWLYHKCGSCGSYNTRVIKSEAANSSCL* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0804 1242 CDD Hr-like 305 434 - -
Gso7g0804 1242 Gene3D nmb1532 protein domain like 304 452 - -
Gso7g0804 1242 Gene3D nmb1532 protein domain like 44 194 - -
Gso7g0804 1242 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 1242 - -
Gso7g0804 1242 Gene3D nmb1532 protein domain like 648 891 - -
Gso7g0804 1242 Gene3D - 1197 1238 - -
Gso7g0804 1242 CDD Hr-like 654 814 - -
Gso7g0804 1242 Pfam Ring finger domain 1125 1167 IPR001841 -
Gso7g0804 1242 CDD RING-H2_Pirh2 1125 1168 - -
Gso7g0804 1242 SUPERFAMILY Zinc hairpin stack 1063 1119 IPR037275 -
Gso7g0804 1242 MobiDBLite consensus disorder prediction 965 983 - -
Gso7g0804 1242 SUPERFAMILY RING/U-box 1123 1178 - -
Gso7g0804 1242 ProSiteProfiles Zinc finger CHY-type profile. 990 1059 IPR008913 GO:0008270
Gso7g0804 1242 ProSiteProfiles Zinc finger RING-type profile. 1126 1168 IPR001841 -
Gso7g0804 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1121 1170 IPR013083 -
Gso7g0804 1242 PANTHER CHY ZINC FINGER PROTEIN 21 1242 - -
Gso7g0804 1242 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Gso7g0804 1242 Pfam Hemerythrin HHE cation binding domain 652 815 IPR012312 -
Gso7g0804 1242 Pfam Hemerythrin HHE cation binding domain 53 176 IPR012312 -
Gso7g0804 1242 Pfam CHY zinc finger 997 1072 IPR008913 GO:0008270
Gso7g0804 1242 ProSiteProfiles Zinc finger CTCHY-type profile. 1062 1125 IPR017921 -
Gso7g0804 1242 MobiDBLite consensus disorder prediction 883 905 - -
Gso7g0804 1242 CDD Hr-like 48 174 - -
Gso7g0804 1242 MobiDBLite consensus disorder prediction 965 984 - -
Gso7g0804 1242 SUPERFAMILY CHY zinc finger-like 989 1054 IPR037274 GO:0008270
Gso7g0804 1242 Pfam Zinc-ribbon 1173 1230 IPR039512 -
Gso7g0804 1242 SMART ring_2 1126 1167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0804 Gso-Chr7 8832699 8842725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0804 1 1241 C2H2 Transcription Factor Family AT3G18290 66.614 0.0 1701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0804 K16276 - gmx:100791354 2502.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0804 7 8832699 8842725 Gso7g0804 7 8832699 8842725 ECH
Gso7g0804 7 8832699 8842725 Gso9g1498 9 39230431 39242119 GST