Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0785 ATGACCAACGAAATGAAAGAAGCAAGTGCCTTAGGAGCTAGAACAGCACGAGCATGCGAGAGCTGCCTAAAAGTAAGAGCACGGTGGTATTGTGCAGCTGATGATGCATTCCTTTGCCATGGCTGTGACAACATGGTTCACTCAGCAAACCAATTAGCAAGTAGACACGAAAGGGTTAAGCTTCAAACTGCATCCTCTAAGGTCAACTACTCAGTGACCCCTAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACGCCACGCCACAACAACAACAGACACTCATCATTGAAACAACAACAACAAAAAAAACCATTACATGAAGAACGAGGAGAGGAAGAAGTGTTTTTCAATAACACTATTAGTCTTCTTCCCCTTGTGCCTGAGCTTGGAAGTGAAGAGCCATTGCTTAATGATGAGACTGAGGAGCAACTACTGTGTCGCGTGCCGGTGTTTGATGCTGAGCTTTGTAGCATATACAATGAAGTGAAGGACGAGGTTGTAGCTGCTGGTGAAGAAGCCTTGGACTTGGAAAACTTTTCTTCCGAGTTTCTTCCATCAGATACGGACCTTGCTGAGTTTACTGCTGATGTGAAAAGCTTTCTTGGAAACGGGGCTGATGAGGATTCACCTGATGATGATGAGCACGTGAAAGAATCAGAACTACTGATTCTTGATTGCAAAGAAGAAGAAGGAGATGAGGAAATGGATGAATGTATTGATGGAGTACTAATTGGAGCCAAAGATGCAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATGCTGATGATGACACAGCTTGCCATTTGGATTCGATTCTTGATATGAACGGCGAGGCATTTAATTGGAATATTGTTGAATCAGAATCACCTGCACAGGCACAAGAAGATGAAGTGAGTAAAGTGGGAACTAAGAAGGACATATTTTTGAGATTAAACTATGAAGAAGTCATTACTGCTTGGGCAAGTCAAGGTTCTCCATGGACTAATGGGACCCCACCTAAGTTCTTCAACTCTGATGATTGCTGGCTAGACTTCTTGGGTTCGAATGGTGGGAATGTTCAATGCTGTTATGGGGCAGTGGGAAGCTTAAGGGTGCATGCAGATGGGGGAAGGGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACGCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAACGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGGACACCCTTTGTTGGAGCCACTGCGTTGCCAGCTTAA 1284 0.4424 MTNEMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLASRHERVKLQTASSKVNYSVTPKVAWHSGFTRKARTPRHNNNRHSSLKQQQQKKPLHEERGEEEVFFNNTISLLPLVPELGSEEPLLNDETEEQLLCRVPVFDAELCSIYNEVKDEVVAAGEEALDLENFSSEFLPSDTDLAEFTADVKSFLGNGADEDSPDDDEHVKESELLILDCKEEEGDEEMDECIDGVLIGAKDAMVKVKDEEELDADDDTACHLDSILDMNGEAFNWNIVESESPAQAQEDEVSKVGTKKDIFLRLNYEEVITAWASQGSPWTNGTPPKFFNSDDCWLDFLGSNGGNVQCCYGAVGSLRVHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTPFVGATALPA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0785 427 Pfam CCT motif 374 416 IPR010402 GO:0005515
Gso7g0785 427 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 422 - -
Gso7g0785 427 ProSiteProfiles CCT domain profile. 374 416 IPR010402 GO:0005515
Gso7g0785 427 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Gso7g0785 427 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Gso7g0785 427 CDD Bbox1_BBX-like 18 59 - -
Gso7g0785 427 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 422 - -
Gso7g0785 427 SMART bboxneu5 14 61 IPR000315 GO:0008270
Gso7g0785 427 MobiDBLite consensus disorder prediction 81 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0785 Gso-Chr7 8651610 8654045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0785 8 416 C2C2-CO-like Transcription Factor Family AT1G25440 41.270 5.38e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso7g0785 zf-B_box 2.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0785 - - gmx:100802113 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1990 5 43010096 43011969 Gso7g0785 7 8651610 8654045 PCT
Gso8g0346 8 3274044 3275969 Gso7g0785 7 8651610 8654045 PCT
Gso7g0785 7 8651610 8654045 Gso5g1990 5 43010096 43011969 PCT
Gso7g0785 7 8651610 8654045 Gso8g0346 8 3274044 3275969 PCT