Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0767 ATGGATTTAGAAGACAAGTTCCTCGCTAAAGTTTCTGGTGTTCAAAGCCTTTCATCCAGTGCACAAAGTACTCCAGAAAAAAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTTCTTCAGGAGTTCCTAAAATCTGGTCCTAAGAAGGAAATTTTACGAACTTGCTTTGATAAGGACAAAAAGAACATTTCTTCAAAAAGCAGGATGGCTGAAACCAAGTCAACCAGTAAGATTGTCAAGAAACAGGACTCAAAAAAAGTTTCTGGTATCAGCAATCAGCCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCGGTGCGGTTCGTACCAACTCCTGACCCACCTAGTGATTTTGGACATTCAAACTCTTGGATCTGTAAGAATTCTGCCTGCCGAGCTGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATGTGAATCTTCTCAAGGGGACTCTTGTGGGTTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTAGGAGTTGTTGATCATGGACAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATAGCAAAAGATGCCCGGCGTGTAGATGTACTATGCTACAGAATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAGGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAGATGGCCCGTGGGATTGTCAGCAGACTCCCTATTGCCAGTGACGTACAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGAATGGTTGGCCACTGTTCCCAATGTACATCCAGAATCCAGAGAGGGTTCTCTTCCTGCTGCATGCAAGGTTGTGTTTGAAGAGGTAACAGCTTCCTCAGTCAAAATCATTTTAATTGAAATGTCAAATGCATCTTCTGGGGACGTTAAGGGATACAAGCTCTGGTATTACAAGAGTAGGGAGGAGTCGCACACTAAAGATCCCGTTTCTGTGTTTCCCAAAGCTCAGAGAAGGATTTTGATATCCAACCTCCAGCCTTGCACAGAATATACATTTCGGGTTGTATCTTTTACAGATATGGGTGACCTGGGTCATTCTGAGGCCAAGTGTTTCACCAAGAGCATTGAGATATTGGAAAAGAATTCATCGTCATCAGTTGCCATGAATAAAAAAAAGGAGAACCTTCAAACTGAATGCAATTCTTCTGGCTCCAAAATGGAGCCCAATCCCACAATGGAAGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATTTTGCATCTTTCTTGGGCTCAAGAACAAGGCTGCTCTGAGGAATTTTGCTGCGCTGACAAGAGAAAATGCTGTGGGCAAAGTGAAACAATCAAGCCTACCAATCCACAAGAGCTGTTGCCTTCAGTTTCTCGTGACCTTGATCTAAATGTTGTTTCGGTGCCTGATTTAAATGAAGAGCTTACACCTCCATTCGAGTCTTCTAGGGATGAAGATAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCTGCTTCGCATGATTTAGAAAAAAATTTAGCAAGATCACACGGTAGTGGTGGTTCCCAAACTTGGAACCATGGACCTACTGGTGAAGTTCCAGCAGTTGACTCTCGTGGAGATGCATGTAGGAAGAGGGTAGCAAGCACAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGATTCTCCTTTACGTGCATCTGATGGTCCATTCTCCTTAGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAACAAGAACGTCGGGTGGTAAATACTTTCATTCAAGCTCTGATTGATGATCCAAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTCTAATAAGGCTGTGTCATCAAGTTAA 2160 0.4222 MDLEDKFLAKVSGVQSLSSSAQSTPEKNGHSDDASRSSELLQEFLKSGPKKEILRTCFDKDKKNISSKSRMAETKSTSKIVKKQDSKKVSGISNQPSRKQHRKGENPVRFVPTPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESSQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNVHPESREGSLPAACKVVFEEVTASSVKIILIEMSNASSGDVKGYKLWYYKSREESHTKDPVSVFPKAQRRILISNLQPCTEYTFRVVSFTDMGDLGHSEAKCFTKSIEILEKNSSSSVAMNKKKENLQTECNSSGSKMEPNPTMEDSGFKVRDLGKILHLSWAQEQGCSEEFCCADKRKCCGQSETIKPTNPQELLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLEKNLARSHGSGGSQTWNHGPTGEVPAVDSRGDACRKRVASTNEETHDCDSTLINDSPLRASDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQALIDDPSSLAGQLVDSFSDIISNKRPRNGFSNKAVSSS* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0767 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 715 IPR044514 GO:0010048|GO:0040029
Gso7g0767 719 MobiDBLite consensus disorder prediction 12 28 - -
Gso7g0767 719 Pfam Fibronectin type III domain 332 413 IPR003961 GO:0005515
Gso7g0767 719 MobiDBLite consensus disorder prediction 436 458 - -
Gso7g0767 719 MobiDBLite consensus disorder prediction 569 598 - -
Gso7g0767 719 MobiDBLite consensus disorder prediction 436 459 - -
Gso7g0767 719 ProSiteProfiles Fibronectin type-III domain profile. 329 426 IPR003961 GO:0005515
Gso7g0767 719 MobiDBLite consensus disorder prediction 11 40 - -
Gso7g0767 719 MobiDBLite consensus disorder prediction 65 115 - -
Gso7g0767 719 CDD FN3 332 411 IPR003961 GO:0005515
Gso7g0767 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Gso7g0767 719 Gene3D Immunoglobulins 314 424 IPR013783 -
Gso7g0767 719 MobiDBLite consensus disorder prediction 65 86 - -
Gso7g0767 719 SUPERFAMILY Fibronectin type III 331 411 IPR036116 GO:0005515
Gso7g0767 719 PANTHER VIN3-LIKE PROTEIN 1 55 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0767 Gso-Chr7 8408198 8416686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0767 124 710 PHD Gene Family AT3G24440 49.750 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0767 - - gmx:100780157 1453.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0767 7 8408198 8416686 Gso9g1544 9 39689430 39697872 GST
Gso5g1978 5 42905949 42917551 Gso7g0767 7 8408198 8416686 PCT
Gso8g0336 8 3159265 3169097 Gso7g0767 7 8408198 8416686 PCT
Gso7g0767 7 8408198 8416686 Gso5g1978 5 42905949 42917551 PCT
Gso7g0767 7 8408198 8416686 Gso8g0336 8 3159265 3169097 PCT