Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0679 ATGGCTGGAGCTGAAGCTACAAAATATGCTTCTTCTGCTACAAGTCCAACAACCACTGCGGCAAACAACATGGCCACCAAATCGAACAAACCAACCATCAGAAGGTTCATTGGGGTGAGGCAAAGACCCTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCTTCTCAGCACGTGAGATTATGGCTTGGAACCTATGATACTCCAGAAGAGGCCGCAAGGGCTTATGATGAAGCAGCACGAGCTCTGAGAGGTGAAAATGCTAGAACCAACTTTGCACCAGTGAGCCAAGTCATACTGGGTCAACAACAATCAGGCTCTAATAATAACCTTTCAACTGGGTCTGATATTGGGAAGCATGGTTTGAGCTTTGCTTCCTTGAAGGCCAAGTTGAGCAAGAATCTTCAGAACATTATGGCTAGGGCAAGTGATCACAATAACAACAACAAGTCCTCAAAGAGTAGGGTGAGTGACCACTTCACCTTTGCCAGCATCTTCCACCGTAGGAGCTACCAAATCCCTGAAGGGGACACGATGAAGAACATTGACAAAGTGGTGCAGCCTAGTATTATTGTGCCTCCTATGGAAGCTGGTGGTGTTGGTGACTATAATTCTTCTGTTGCTAATTGGGAAAGTGCTTCTAGTGTCTCTGATTGCAGCTCTGAATGGGTAGGATTCGGGAATTCGAAACTCGGGTTGGAGTCGGACGGGTATGAGATAGGGGAGGCTAGTGTTGGTGATCAAGGGTTCTTGGAGCAGTTAATGGGGTGGATTGAAACCCCTGATATTAGTGATCATCAAGGTGAGGGTTCAAGGAGTAAGAGGTTCAAGGTGTCTTCTTCTGTGCTTGTGCCACCTACTTTCACTGGCTCTTCTTATGATTGTGGATCCCCTTTTAGTGGTTATGCCTCTCCTTATAATAACGGTTATGCTTCTCCATATAACAACGGTTGTGCCTCCCCTTGTAATGGTTATGCTTCTCCGTATTACAATAATAAGAAGTGA 1002 0.4601 MAGAEATKYASSATSPTTTAANNMATKSNKPTIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPVSQVILGQQQSGSNNNLSTGSDIGKHGLSFASLKAKLSKNLQNIMARASDHNNNNKSSKSRVSDHFTFASIFHRRSYQIPEGDTMKNIDKVVQPSIIVPPMEAGGVGDYNSSVANWESASSVSDCSSEWVGFGNSKLGLESDGYEIGEASVGDQGFLEQLMGWIETPDISDHQGEGSRSKRFKVSSSVLVPPTFTGSSYDCGSPFSGYASPYNNGYASPYNNGCASPCNGYASPYYNNKK* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0679 333 MobiDBLite consensus disorder prediction 8 29 - -
Gso7g0679 333 SUPERFAMILY DNA-binding domain 36 92 IPR016177 GO:0003677
Gso7g0679 333 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 271 - -
Gso7g0679 333 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Gso7g0679 333 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Gso7g0679 333 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Gso7g0679 333 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Gso7g0679 333 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Gso7g0679 333 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Gso7g0679 333 Coils Coil 127 147 - -
Gso7g0679 333 MobiDBLite consensus disorder prediction 1 29 - -
Gso7g0679 333 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
Gso7g0679 333 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0679 Gso-Chr7 7295001 7296604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0679 35 92 AP2-EREBP Transcription Factor Family AT5G19790 74.138 8.61e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso7g0679 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0679 K09286 - gmx:100799444 627.476