Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0678 ATGAAACCTGTTTTCTGTGGAAACCTGGATTTCGACGCGCGTCAATCTGACGTGGAGAGGCTCTTCAGAAGATACGGCAAAGTTGATAGAGTTGACATGAAATCCGGGTTTGCTTTTGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGATCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCTGTTCATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAAGAGGACGCTACTAGAGCTTTGGAGGCCACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATTAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCTAGTCCTTATCGTAGAGGTCGGGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCAGACCAGATCCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATAAATAATGGGAGATATGATAGCCGATCTCCCCCACCCCGAGAAAGGTCGCGATCTTGA 762 0.4423 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPDPRGSPKYERAESPINNGRYDSRSPPPRERSRS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0678 253 Gene3D - 88 178 IPR012677 -
Gso7g0678 253 Gene3D - 1 87 IPR012677 -
Gso7g0678 253 SMART rrm1_1 97 163 IPR000504 GO:0003723
Gso7g0678 253 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gso7g0678 253 MobiDBLite consensus disorder prediction 170 192 - -
Gso7g0678 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Gso7g0678 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Gso7g0678 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gso7g0678 253 MobiDBLite consensus disorder prediction 72 94 - -
Gso7g0678 253 SUPERFAMILY RNA-binding domain, RBD 4 171 IPR035979 GO:0003676
Gso7g0678 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Gso7g0678 253 PANTHER - 4 213 - -
Gso7g0678 253 MobiDBLite consensus disorder prediction 170 253 - -
Gso7g0678 253 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 213 - -
Gso7g0678 253 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0678 Gso-Chr7 7282868 7286510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0678 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 5.52e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0678 K12893 - gmx:100815452 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0678 7 7282868 7286510 Gso7g0678 7 7282868 7286510 ECH