Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0652 ATGGAAGCAGCAGCAGCAACAGCAAACTCTTCTCAGAGAAAGCCGAAGAGAAAACGAGCTTCAGCAAAAAGCGATCCCGAACTTGACCGTCTCGACTCGCTTCCGTGGAACTCCGCTCTTCCTCAAAACGACGACGACGACGCTTTCTCCTTGTTCATTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCTGAGTATGGTTTGAGTATTCCCGAACCTGAAGTTGACAAGAGGAAGACGAAGAAGAAGAAGTCTGAACAGAACGAAAATGTGAAGAAGCAGCAGCAGGATGGAGTTGACAGTGCTTGTAGCGACGACACGGTGGTCGAAGCAGAGTTGGATGAGAGTCTGAAGTCTAAAGAGAAGAAGAAAAAGAAGAAGAAGACAAAGAACAAGAAGAAGGATGCCAGAGAAGATCAGACAGTTGAGCCGTCAGATGCTGGTTTAGATACTAATGTGAAGGATGATATTGGGGAGGAGGACGTTGATGAAACTGAATTTTATGCATGGAATGAATTGAGGCTTCATCCTCTCCTCTTGAAAGCTATATGCAAGCTTGGCTTCAAGGAGCCAACACCAATTCAGAAGGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGACGTTGTTGGGGCTGCTGAGACAGGATCCGGCAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTCTTTTGGAGGAGAGAGAGAAGGCCGGAAACATGGTTGGAGAAAGGGGTGAAGAACCTGAAAAGTATGCTTCTACTGGTCTTCTGAGGGCTCTTATTATTGCTCCGACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAACATATTAATGTTAGAGTGACTCCTATAGTTGGGGGAATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTTGGGACTCCAGGAAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTGCTGGATGAGGCTGATCGTATGGTACAAAATGGTCATTTTAAGGAGTTGCAGTCAATAATTGATATGCTTCCCATGTCCAACAATTCTGCTGAAGATAACTCTCAACATGTACAAAGTTGTGTTACAGTTTCTAGTTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCTGCAACTGTTGCACTATCTTCTGATTTTCGCAAGAAGCTAAAACGAGGCTCAATTAAACAAAAGCAATCATTGACAGATGGATTGAATTCTATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCTAATGCAGCAATTATTGATCTTACTAATCCGTCTATATTAGCAACTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCCTATTTGTACTATATTTTGACTGTCCATGGACAAGGACGCACAATAGTTTTCTGTACTTCAATTGCAGCTTTACGCCATATTTCTTCCATACTGCGCATTCTTGGCATCAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGTGCTCGTTTGAAGGCCATGGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGAAGGTTGTAGTATTGCTTTAATATCATCAAGAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCCAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAACGATTATCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGATTCCCAGGAAAAGGCTGAGAAAAACTGGTTTGATAGGAATTCTAGCTCAGTAGAATTAGTTACAGAAAGTTATGACAGCGAAGAGGAACAAGTGAACAAACATAAGCAAATGAAGGCCAGCTCTAGACAATTGAAGAAATTGCAGGAGGATCTCAAAATACTGATTTCACGTCCATTACAATCAAAAACATTTTCACATCGATATTTAGCTGGGGCTGGTGTCTCACCCCTCATGCAGGAGCAATTGCAACAATTAGCAAGGCAAAAACTAAGTGATCACCAGGGTTCAGGACTAGGCAAAAAGGGGAAGTTGGTAGTGATTGGTCAAGATTGTGTGGATGCACTTCAGGCACTTCGAAGTGCTGGTGAAGAGGTGCGAATGGATGCCAAGGATTTGGCTGGAAAACAGAGAAATATGCAGAATTTAAAAAGAAAGCGTAAAGAGGAGAAAAAGCGTTTGCGTGATCAGCGTAGAAAGCAGAAGAAAAAGCTAAAATACGGGGATGAATAG 2433 0.4229 MEAAAATANSSQRKPKRKRASAKSDPELDRLDSLPWNSALPQNDDDDAFSLFIGSNELEGGFLSLEEIDEAEYGLSIPEPEVDKRKTKKKKSEQNENVKKQQQDGVDSACSDDTVVEAELDESLKSKEKKKKKKKTKNKKKDAREDQTVEPSDAGLDTNVKDDIGEEDVDETEFYAWNELRLHPLLLKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKAGNMVGERGEEPEKYASTGLLRALIIAPTRELALQVTDHLKAVAKHINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNNSAEDNSQHVQSCVTVSSYQRKKRQTLVFSATVALSSDFRKKLKRGSIKQKQSLTDGLNSIETLSERAGMRSNAAIIDLTNPSILATKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISSRDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQEKAEKNWFDRNSSSVELVTESYDSEEEQVNKHKQMKASSRQLKKLQEDLKILISRPLQSKTFSHRYLAGAGVSPLMQEQLQQLARQKLSDHQGSGLGKKGKLVVIGQDCVDALQALRSAGEEVRMDAKDLAGKQRNMQNLKRKRKEEKKRLRDQRRKQKKKLKYGDE* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0652 810 PANTHER RNA HELICASE 83 730 - -
Gso7g0652 810 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 622 IPR001650 -
Gso7g0652 810 MobiDBLite consensus disorder prediction 72 111 - -
Gso7g0652 810 SMART ultradead3 194 426 IPR014001 -
Gso7g0652 810 Pfam Helicase conserved C-terminal domain 473 581 IPR001650 -
Gso7g0652 810 MobiDBLite consensus disorder prediction 77 100 - -
Gso7g0652 810 Gene3D - 121 423 IPR027417 -
Gso7g0652 810 MobiDBLite consensus disorder prediction 780 802 - -
Gso7g0652 810 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 83 730 - -
Gso7g0652 810 CDD SF2_C_DEAD 462 591 - -
Gso7g0652 810 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 175 203 IPR014014 GO:0003724
Gso7g0652 810 SMART helicmild6 501 582 IPR001650 -
Gso7g0652 810 Coils Coil 126 146 - -
Gso7g0652 810 CDD DEADc_DDX24 186 451 - -
Gso7g0652 810 Coils Coil 84 104 - -
Gso7g0652 810 MobiDBLite consensus disorder prediction 770 810 - -
Gso7g0652 810 MobiDBLite consensus disorder prediction 125 162 - -
Gso7g0652 810 Coils Coil 773 804 - -
Gso7g0652 810 MobiDBLite consensus disorder prediction 140 162 - -
Gso7g0652 810 Pfam DEAD/DEAH box helicase 199 407 IPR011545 GO:0003676|GO:0005524
Gso7g0652 810 Gene3D - 459 701 IPR027417 -
Gso7g0652 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 597 IPR027417 -
Gso7g0652 810 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 424 IPR014001 -
Gso7g0652 810 MobiDBLite consensus disorder prediction 1 49 - -
Gso7g0652 810 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 346 354 IPR000629 -
Gso7g0652 810 Coils Coil 678 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0652 Gso-Chr7 6943576 6952151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0652 176 622 Eukaryotic Initiation Factors Gene Family AT5G11200 27.813 5.48e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0652 K14805 - gmx:100806018 1505.35