Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0643 ATGTCATTCACAGGAACTCTTGATAAATGCACAGCATGTGACAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGAATTCCTTACCATAAAAACTGCTTCAAGTGCAGTCACTGCAAGGGATGTCTTACGATGTGCACATACTCCTCAATGGATGGAATTCTTTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTTCTGAGAAGCAAAATGAGTTGAATAGAACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCAGGACAAATGCTCAGTTTGCACAAAAACAGTATATCCTCTGGAAAAGATGACACTTGAAGGGGAATGCTTCCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCCCTTGATGGTGTTCTCTACTGCAGGGTCCACTTTGCACAACTTTTCATGGAGAAAGGGAACTACAACCATGTGCTCCAAGCTGCTGCACACAGGAGGACTGGTTCCTCTACACCTCCACTACTAGAGGAGCCATCACAAGAGCCAGCACCACCAGCATCTCATGAGGACCAAACAGAAGAAGAGACACCTCTTGAATGA 633 0.4471 MSFTGTLDKCTACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGCLTMCTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSEKQNELNRTPSKLSSMFSGTQDKCSVCTKTVYPLEKMTLEGECFHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYNHVLQAAAHRRTGSSTPPLLEEPSQEPAPPASHEDQTEEETPLE* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0643 210 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 206 - -
Gso7g0643 210 MobiDBLite consensus disorder prediction 175 210 - -
Gso7g0643 210 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gso7g0643 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gso7g0643 210 PANTHER OS06G0237300 PROTEIN 1 206 IPR045268 GO:0051015
Gso7g0643 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gso7g0643 210 SMART lim_4 103 155 IPR001781 -
Gso7g0643 210 SMART lim_4 9 61 IPR001781 -
Gso7g0643 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Gso7g0643 210 Pfam LIM domain 10 65 IPR001781 -
Gso7g0643 210 Pfam LIM domain 104 159 IPR001781 -
Gso7g0643 210 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Gso7g0643 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 170 - -
Gso7g0643 210 Gene3D Cysteine Rich Protein 101 168 - -
Gso7g0643 210 Gene3D Cysteine Rich Protein 5 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0643 Gso-Chr7 6844327 6847049 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gso7g0643 LIM 3.4e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0643 - K09377 gmx:100305845 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0643 7 6844327 6847049 Gso7g0643 7 6844327 6847049 ECH
Gso7g0643 7 6844327 6847049 Gso3g0114 3 1379549 1382035 GST
Gso18g1986 18 52463060 52465584 Gso7g0643 7 6844327 6847049 PCT
Gso9g2156 9 45848959 45850886 Gso7g0643 7 6844327 6847049 PCT
Gso7g0643 7 6844327 6847049 Gso18g1986 18 52463060 52465584 PCT
Gso7g0643 7 6844327 6847049 Gso9g2156 9 45848959 45850886 PCT