Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso7g0634 | ATGAATCACAACAACAGCAACAACAGCAACAACAATAGAGCGAGGTACCCTCCTGGGATGGGACTTGGGCGCGGGGGTTTCAATCCGAACCTGAGCCAGAACCCGAACCAGAACCAGAATCATCACGCGTTCCAGGCTCGGCCGCCGTACCACCAACAGCAACAGGCGCAATATGTGCAGAGGCATTTGTTGCAGCAGCAGCAGCAGCAGCAGTGGCTGAGAAGGGATGCCAACGCCGTCGACGAGGTTGAGAAGACCGTGCAGTCTGAAGCCGTGGATTCGAGATCAAAGAGATCCCATTGTCTGTCTAGCCTGATTGTGAGGTCCTGTTGTGGTGCTGCTGGCTTTCTTTCTATGTGCTGCTGCTCGCTTTCTTTCTATGTGCTGCTGCTTGTGCTCTTTCCAGAACTTTCCCAAGATTGGAAAGCAAGACTAAAGATTCCACCTGCTGATACTCGCTATAAGACAGAGGATGTAACGGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAATTGGCATTGCAAACTTCTCAAGTGTGCAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATACTGCGCTTATATCAACCGGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTACCAAGAAAGGTGTTTGTATTCTGAAAGATTGCGCTATGCTTGTTATGGATGAGGCCGATAAGCTTCTGTCCCCAGAGTTTCAACCATCTATAGAGCAGCTGATTCATTTTCTTCCTACAACCCGTCAAATCTTGATGTTTTCAGCCACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCAAAAGCCTTATGTCATCAATCTTATGGATGAGCTAACTTTGAAGGGTATTACACAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTACTTGCCAAGAAAATCACGGAACTTGGGTATTCATGTTTCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCAAAGAATGCAGAGACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATTACCTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCCCCACAAATTGATCAGGCAATTTATTGTCGGTGA | 1620 | 0.4272 | MNHNNSNNSNNNRARYPPGMGLGRGGFNPNLSQNPNQNQNHHAFQARPPYHQQQQAQYVQRHLLQQQQQQQWLRRDANAVDEVEKTVQSEAVDSRSKRSHCLSSLIVRSCCGAAGFLSMCCCSLSFYVLLLVLFPELSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDILRLYQPVHLLVGTPGRILDLTKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLIHFLPTTRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR* | 540 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso7g0634 | 539 | Gene3D | - | 142 | 369 | IPR027417 | - | |
| Gso7g0634 | 539 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 137 | 539 | - | - | |
| Gso7g0634 | 539 | SMART | helicmild6 | 416 | 497 | IPR001650 | - | |
| Gso7g0634 | 539 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Gso7g0634 | 539 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 | 137 | 539 | - | - | |
| Gso7g0634 | 539 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Gso7g0634 | 539 | Gene3D | - | 370 | 539 | IPR027417 | - | |
| Gso7g0634 | 539 | CDD | DEADc_DDX6 | 167 | 367 | - | - | |
| Gso7g0634 | 539 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 196 | 366 | IPR014001 | - | |
| Gso7g0634 | 539 | Pfam | DEAD/DEAH box helicase | 190 | 354 | IPR011545 | GO:0003676|GO:0005524 | |
| Gso7g0634 | 539 | SMART | ultradead3 | 184 | 380 | IPR014001 | - | |
| Gso7g0634 | 539 | CDD | SF2_C_DEAD | 377 | 506 | - | - | |
| Gso7g0634 | 539 | MobiDBLite | consensus disorder prediction | 27 | 42 | - | - | |
| Gso7g0634 | 539 | Pfam | Helicase conserved C-terminal domain | 391 | 497 | IPR001650 | - | |
| Gso7g0634 | 539 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 165 | 193 | IPR014014 | GO:0003724 | |
| Gso7g0634 | 539 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 312 | 320 | IPR000629 | - | |
| Gso7g0634 | 539 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 376 | 536 | IPR001650 | - | |
| Gso7g0634 | 539 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 235 | 519 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso7g0634 | Gso-Chr7 | 6762317 | 6769655 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso7g0634 | 167 | 536 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 38.441 | 2.01e-93 | 289 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso7g0634 | K12614 | - | gmx:100800861 | 881.708 |