Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0630 ATGGATCGAGGGGACCAAATGACATTTCCTGGCTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAAATCAACCTGAACTGCACAATTCACCTAATATTCGACCGTTGTCTAATTCGAATCTACCGTTTCAATCAAGCATTGGGGGTGGTGGTACCATTGGATCCACATTACCATTAGAGTCGTCGGGAATTTCAGCTCCATGTGTCAATGTGAGTGCTCCTTCTGGGGCTGTGCCTGGGGAAACTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGCCCGATGGAGCTGTGTCGTTGGCGTTGACTCCGACACCGGCTAGTCATCCTGGAGCCTTGGCACAAGGCCAGAAACGGGGCAGAGGGCGCCCGCCTGGGTCTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGGCCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCCGTTTCTACTGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATAGTGTGCCTGTCAGGCTCTTACTTGGTTGCTGATAGTGGTGGCACCCGCAATCGAACTGTTGCATTAAGTGTTTCACTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTGCTTATTGCTGCAAGTCCAGTTCAGGTGATACTTGGGAGCTTTTCATGGGGTGCATCAAAGACAAAGATAAAGAAAAAAGAAGGTTCAGAAGGTGCAGAAGTTGCTATGGAGACTGATCATCAGACGGTTCATAATCCAGTTGCAGTGAATAGTATTTCCCCAAATCAAAATCTTACTCCAACCTCATCTCTAAGTCCTTGGCCTGCATCGCGACCATTGGATATGCGCAATTCCCATATTGACATTGATTTAATGCGCGGGTGA 1023 0.4809 MDRGDQMTFPGSASYYMQRGIPGAGNQPELHNSPNIRPLSNSNLPFQSSIGGGGTIGSTLPLESSGISAPCVNVSAPSGAVPGETVKRKRGRPRKYGPDGAVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVADSGGTRNRTVALSVSLASPDGRVIGGGVGGVLIAASPVQVILGSFSWGASKTKIKKKEGSEGAEVAMETDHQTVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0630 340 CDD DUF296 153 267 IPR005175 -
Gso7g0630 340 MobiDBLite consensus disorder prediction 72 137 - -
Gso7g0630 340 MobiDBLite consensus disorder prediction 304 321 - -
Gso7g0630 340 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Gso7g0630 340 MobiDBLite consensus disorder prediction 1 50 - -
Gso7g0630 340 MobiDBLite consensus disorder prediction 304 323 - -
Gso7g0630 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 316 IPR039605 GO:0003680
Gso7g0630 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 275 - -
Gso7g0630 340 MobiDBLite consensus disorder prediction 28 50 - -
Gso7g0630 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 316 - -
Gso7g0630 340 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gso7g0630 340 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Gso7g0630 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Gso7g0630 340 Gene3D - 154 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0630 Gso-Chr7 6700374 6706926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0630 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.833 1.29e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0630 - - gmx:100799791 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0630 7 6700374 6706926 Gso7g0630 7 6700374 6706926 ECH
Gso7g0630 7 6700374 6706926 Gso3g0096 3 1061294 1068986 GST
Gso18g1979 18 52396212 52404162 Gso7g0630 7 6700374 6706926 PCT
Gso9g2147 9 45762665 45769694 Gso7g0630 7 6700374 6706926 PCT
Gso7g0630 7 6700374 6706926 Gso18g1979 18 52396212 52404162 PCT
Gso7g0630 7 6700374 6706926 Gso9g2147 9 45762665 45769694 PCT