Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0612 ATGGCTATGGTGAGTTCTATGCCTGCAACTCCACCACAGGTCAATCCTGTGAACTCACTTCGTGATATTGGGGTTCCTGGAATCATGACCAGCAGGAGAAAAATTGTAAATAAGCCTAGTCCAAGTATGGTTAATGACACAATCTATGTTGCTGTGGGAAAGAATGTGAAAAGTAGCAAATCAAATCTCATATGGGCAATACAGAACTCTGGAGGAAGGAGAATTTGCATTCTTCATGTTCACGTGCCAGCACCTATGATCCCCTTGATGGGTGCCAAATTTCCTGCTAGTGCGCTGAGAGAGGAGGAAGTTCAAGATTACCACGAAACAGAAAGGCTAAAAATGTACAAGACTCTGGATGCCTATCTTTCTATCTGTCAAGGGATGGGGGTGCGTGCAGGGAAACTACAAATTGAAATGGATTGCATAGAAAAAGGAATTGTTGAACTCATCTCCCAGTATGGCATACAGAAGCTTGTGATGGGAGCAGCATCAGATAAGTACCATTCAAGGAGGATGACGGCCCCCAGGTCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCCTCTTGTCATATACAGTTTATCTGCAACGGCTACCTCATACACACAAGGGATTGCAGTTTGGATATAGGGAATGTAGAGGTTGCATTTCCTATGGCGCAGCAAATGGCAAACTCTGAAGTTGGAGGTTCTCCTAAATTGAGATCCCAATCAATTGTGCAAGGGCAAAATCATGGGATAAAACTAACTAATCCAGCTCAAGAGTTATTTCGTAGAGTAAGGTCTGTCAATGATGGACATAGGAGGAGCCTTGCATCTGTTTCTGATGAGTCATATGGGCAGTCAGGGAGGAGTCCTTCAGTTTTCTCAATGTGCTCTCACAGTATTTCAGTTGAACCAGGATTGACCCCAAATTTGATAAGTGATGGCAGTGAGAATGAATTAGACTTGACTTTGAATGGCCCTTTTCTGATTAACAAGAATCTTCATCATTCAGCATCTCCTAGTGTACTGGAAATGGATGGAGGAATGGATGATGCTCTCTATGATCAACTTGAACAGGCAATGGCTGAGGCTGTGAATTCTAAGCGGGATGCATATCAAGAAACTGTTAGGCGTGGGAATGCTGAAAAAAATGCCATTGATGCTATTCGCAGGGCTAAAACCACTGAAAACTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAACAAGAAGAAGCGGTAGAGAAAGCAAATGAAAAACTTAATAATATGAAGAGCCAGACAGACAAAGTTAATGAGGAACTCCGACTTGCCTTATTTCAGAACTCATCACTAGAGAATCAAATTGCATCAACTGAACTTATGATAAAGGAGTTGGAGCAAAAGATTATATCTGCCGAGAACCTGTTACTAAACTACAAGGATGAACTAGATGATTTGCAAATACAGCGTGATATTGCAGTGGGAGAGGCTGAGGAGTTTAGGAGAAAACAATGGGAAGCCTCATCAAGCGCACACAAGCTTCAATGCTTCTCAGAATTTTCCTTTCAAGAGATTAAAGAAGCAACAAGTAACTTCAATCCATCCCAGAAGATCGGAGAAGGCGGATATGGAAGTATATTTAAAGGTATCTTGCGTCACGCTGAGGTGGCTATAAAAATGTTGAATCGTGACAGCACGCAAGGACCTGAGGAGTTTCAACAGGAGGTTGAAGTATTGAGCAAGTTAAGGCATCCCAATATTATCACACTTATAGGAGCCTGCCCAGAATCTTGGACTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACTCACCTCCATTATCATGGCAAACTCGAATTCGCATTGCTACGGAACTTTGTTCTGCTCTCATTTTTCTTCACTCCAATAAACCTCACAGCATAGCGCATGGTGACCTAAAACCCGCCAATATTCTCCTTGATGCAAACCTTGTTAGCAAGCTCAGTGACTTTGGAATCTGCCGTATATTATTATCCTGTCAAGACAGTTCCAGTAACAGTACTACACAGTTTTGGAGGACTGATCCAAAGGGAACTTTTGTGTATTTGGATCCTGAATTCCTTGCTTCTGGTGAACTTACACCAAAGTCAGATGTTTATTCATTTGGAATCATTCTGTTGAGATTGATGACTGGGAAACCAGCCCTGGGAATAATAAAAGAAGTGCAATATGCATTAGATGCTGGAAAGTTGAAATCAATCTTGGATCCTTTTGCTGGAGACTGGCCATTTATGCTGGCTGAAGAGTTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAATCGGAAGAGCCGGCCAGACCTTTATCCAGATGTTTGGAGGATACTGGAACCAATGAGGGCTTCTTCTGGAGTCACAAACACCTTTCAACTGGGTTCTCAAGGGCTATGCCAACCTCCTCCATATTTTATTTGTCCAATCTTTCTGGAAGTCATGCAAGATCCACATGTAGCCGCTGATGGTTTTACTTATGAAGCTGAGGCTATACGTGAATGGCTAGAAAGTGGTCATGACACTTCACCAAGGACAAATTCCAAGCTTGCTCATCGCCATCTTGTTCCCAACCATGCTCTTCGCCGCGCAATTCAGAACTGGCTTCAAAGTCGCTGA 2646 0.4259 MAMVSSMPATPPQVNPVNSLRDIGVPGIMTSRRKIVNKPSPSMVNDTIYVAVGKNVKSSKSNLIWAIQNSGGRRICILHVHVPAPMIPLMGAKFPASALREEEVQDYHETERLKMYKTLDAYLSICQGMGVRAGKLQIEMDCIEKGIVELISQYGIQKLVMGAASDKYHSRRMTAPRSKKAIYVCEQAPASCHIQFICNGYLIHTRDCSLDIGNVEVAFPMAQQMANSEVGGSPKLRSQSIVQGQNHGIKLTNPAQELFRRVRSVNDGHRRSLASVSDESYGQSGRSPSVFSMCSHSISVEPGLTPNLISDGSENELDLTLNGPFLINKNLHHSASPSVLEMDGGMDDALYDQLEQAMAEAVNSKRDAYQETVRRGNAEKNAIDAIRRAKTTENLYKEELKLRKEQEEAVEKANEKLNNMKSQTDKVNEELRLALFQNSSLENQIASTELMIKELEQKIISAENLLLNYKDELDDLQIQRDIAVGEAEEFRRKQWEASSSAHKLQCFSEFSFQEIKEATSNFNPSQKIGEGGYGSIFKGILRHAEVAIKMLNRDSTQGPEEFQQEVEVLSKLRHPNIITLIGACPESWTLVYEYLPNGSLEDRLNCKDNSPPLSWQTRIRIATELCSALIFLHSNKPHSIAHGDLKPANILLDANLVSKLSDFGICRILLSCQDSSSNSTTQFWRTDPKGTFVYLDPEFLASGELTPKSDVYSFGIILLRLMTGKPALGIIKEVQYALDAGKLKSILDPFAGDWPFMLAEELVRLALRCCEMNRKSRPDLYPDVWRILEPMRASSGVTNTFQLGSQGLCQPPPYFICPIFLEVMQDPHVAADGFTYEAEAIREWLESGHDTSPRTNSKLAHRHLVPNHALRRAIQNWLQSR* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0612 881 CDD STK_N 47 200 - -
Gso7g0612 881 Coils Coil 351 371 - -
Gso7g0612 881 Gene3D Transferase(Phosphotransferase) domain 1 595 794 - -
Gso7g0612 881 Coils Coil 438 493 - -
Gso7g0612 881 Pfam U-box domain 812 880 IPR003613 GO:0004842|GO:0016567
Gso7g0612 881 PANTHER U-BOX KINASE FAMILY PROTEIN 14 880 - -
Gso7g0612 881 SMART serkin_6 522 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0612 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Gso7g0612 881 SUPERFAMILY RING/U-box 807 879 - -
Gso7g0612 881 SUPERFAMILY Protein kinase-like (PK-like) 502 780 IPR011009 -
Gso7g0612 881 SMART Ubox_2 814 877 IPR003613 GO:0004842|GO:0016567
Gso7g0612 881 Pfam Protein kinase domain 524 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0612 881 Gene3D Phosphorylase Kinase; domain 1 492 594 - -
Gso7g0612 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 881 IPR013083 -
Gso7g0612 881 ProSiteProfiles Protein kinase domain profile. 522 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0612 881 Coils Coil 396 430 - -
Gso7g0612 881 ProSitePatterns Protein kinases ATP-binding region signature. 528 549 IPR017441 GO:0005524
Gso7g0612 881 PANTHER OS02G0152300 PROTEIN 14 880 - -
Gso7g0612 881 ProSiteProfiles U-box domain profile. 810 881 IPR003613 GO:0004842|GO:0016567
Gso7g0612 881 CDD RING-Ubox_WDSUB1_like 815 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0612 Gso-Chr7 6501280 6509431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0612 1 879 U-box Gene Family AT2G45910 53.681 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso7g0612 Pkinase 9.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0612 - - gmx:100781596 1734.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0612 7 6501280 6509431 Gso7g0612 7 6501280 6509431 ECH
Gso7g0612 7 6501280 6509431 Gso3g0078 3 846854 853280 GST
Gso18g1968 18 52199213 52206673 Gso7g0612 7 6501280 6509431 PCT
Gso9g2136 9 45646645 45654556 Gso7g0612 7 6501280 6509431 PCT
Gso7g0612 7 6501280 6509431 Gso18g1968 18 52199213 52206673 PCT
Gso7g0612 7 6501280 6509431 Gso9g2136 9 45646645 45654556 PCT