Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0602 ATGGCAGGGCGGTCGGTGTTGAACGCCGGTGTTCGCGTAGAAGATAGTGGCAGCATTGTTGGATGCTCAAACGACGGTTCTCAGCGCCGTTTCGAGGAGTTGGTTTCTGAGTTCACGAGCGAGATCTGTGGGAGTGATTATTTTTTGCCTTTTCCGCCAATGTTGGGTGATGGGAAACCTGTGGATTTGTATAAGCTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGACGCCGTTTGCAATTGTAAGTTGTGGGATATCGTTGGGGAGGAGTCTGGGTTGGGTGTGAGTGTTGGTTCTTCTGTGAAGTTGGTGTATAGTAAGTATTTGAGTGCTTTGGATGCGTGGTTGAAGAAGGTTGCGGAGAGTAAGGTGTCCCCTGAGTGTGGTGTGGTGGATGATAGGGACAAGTTCGGGAGGCGGTTGATGGAGTTGCAGGCAGAGGTGGAAGGGTTGTTATCTGGTTGTGGGGAGGGTGATGTGGCTCGTGAGGAGGTCAAGGGTAGAGTTGATGATGATGATGATAATGTGGATGGGAGGAAGTCGTGTGGTGATGGAAATGGAGGGTGTCTTCCTGATTTGGAGGTGCCGGAGGGTGACATGAATGAGTCGGTTATTGGAAGTGGGGGTGAGGGAAATGAGGTTGATGGAGGTGAAGGAGATAGAAATGGAGGGTATCATGATTTGGAGATGCCGGACCGCGAGGTGAATGAGTCGGTGAATGGAAACTCAGGTGAGGGAAACGATGCAATGGAAGTGGGGGAAGAGTTTGATAGAGGGATAATGTCTAAAGAGCAGGTGGTGGATGTATCAGATGGGGTGAACTACAGTGTGGCTGGATTGTTGAGTGGAGGTCAGAAGTGTGGCGGCAATGATGATAAGGGCTTGGTGTTGGATCCATCTGGTGGGGATAGTGATGGTCGAAAGAGGAAGAGAGACATGTTGGATTTGTCTGATGGTGATAGTGATAGTGATAGTTCTGATCGTAAGAGGATGAGAGAGTTTGCGTTGGATATGCTGAGCTGGGTTACAGGTGCCGCAAAGAATCCCTGTGATCCTGAAGTTGGTTCAATACCTGAAAAGGCAAAGTGGAAGTCTTACAGTAATCAGGAGGTGTGGAAACAGGTGCTGTTGTTTCGAGAATCAGCGTTTCTCAAAAGAGGTTCTGATCCAAGCAGTGAACAACGTAGCTGGCAGAGTCAGAAGATGCACCCTTGCTTGTATGAAGATCACCTTGGGACAAACTACAATCTTAGGGATAGGTTGAAACGTGACAAGAAGATTTTAGTTGGCCAATCTACACCATCTGCACGAAGCTCTTCTGATTCATCTGTAGGAGCTGAGAACAGAACACCAAGTCCTCATACTGAAGATCCCTCTGATGCAAATTCAGGTCTTGACAGATGTGCCACCGTACGCATCCCTTTGGGGGCAAATCATCAAGCTGAAATACCAGAATGGACCGGTGTGATTTCTGAAGGTTATTCTAAGTTTTCAGGGACCCCGATATGGCCATTGGCAACAGCAAATACCAGACTACTTATTGAAAGGGACCCTATAGGAAAGGGAAGACAAGATTCATGCGGCTGCCCTGTACCAGGTTCTGTTGAGTGTGTAAGATTCCACATTACTGAGAAAAGGGCTAAAGTTCATCTGGAATTGGGGGCAGTATTTTATGACTGGAATTTTGATCAGGTAGGTGAAGATGTTAAGCTATTGTGGATGGAAGAAGAAGAGAAAAAATTCAAGGATGTGATACGATCAAACCCTCCATCACCTGAGACATATTTCTGGGACCATATCTTTAGGGCATTTCCTACGAAGAGCAGGGCAGATTTAGTTAGCTACTACTTCAATGTCTTTATTTTGGAGCGCAGAGGATACCAAAATAGGCATACTCCCAATAACATTAACAGTGATGACGAGGACGATGAAGCTGGACCACTGAGGAATGTTTTCGGACAGCAGACACAAAATTCGCGTGGTTCCATCTTATTAACCCCCAAAAAGTCACAGACAAAGAAAAAGTAG 2031 0.4682 MAGRSVLNAGVRVEDSGSIVGCSNDGSQRRFEELVSEFTSEICGSDYFLPFPPMLGDGKPVDLYKLFLVVRGKGGYDAVCNCKLWDIVGEESGLGVSVGSSVKLVYSKYLSALDAWLKKVAESKVSPECGVVDDRDKFGRRLMELQAEVEGLLSGCGEGDVAREEVKGRVDDDDDNVDGRKSCGDGNGGCLPDLEVPEGDMNESVIGSGGEGNEVDGGEGDRNGGYHDLEMPDREVNESVNGNSGEGNDAMEVGEEFDRGIMSKEQVVDVSDGVNYSVAGLLSGGQKCGGNDDKGLVLDPSGGDSDGRKRKRDMLDLSDGDSDSDSSDRKRMREFALDMLSWVTGAAKNPCDPEVGSIPEKAKWKSYSNQEVWKQVLLFRESAFLKRGSDPSSEQRSWQSQKMHPCLYEDHLGTNYNLRDRLKRDKKILVGQSTPSARSSSDSSVGAENRTPSPHTEDPSDANSGLDRCATVRIPLGANHQAEIPEWTGVISEGYSKFSGTPIWPLATANTRLLIERDPIGKGRQDSCGCPVPGSVECVRFHITEKRAKVHLELGAVFYDWNFDQVGEDVKLLWMEEEEKKFKDVIRSNPPSPETYFWDHIFRAFPTKSRADLVSYYFNVFILERRGYQNRHTPNNINSDDEDDEAGPLRNVFGQQTQNSRGSILLTPKKSQTKKK* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0602 676 CDD SANT 574 621 IPR001005 -
Gso7g0602 676 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 50 675 - -
Gso7g0602 676 MobiDBLite consensus disorder prediction 215 230 - -
Gso7g0602 676 Gene3D - 20 127 IPR036431 GO:0003677
Gso7g0602 676 MobiDBLite consensus disorder prediction 631 676 - -
Gso7g0602 676 Pfam ARID/BRIGHT DNA binding domain 50 112 IPR001606 GO:0003677
Gso7g0602 676 MobiDBLite consensus disorder prediction 651 669 - -
Gso7g0602 676 ProSiteProfiles ARID domain profile. 25 118 IPR001606 GO:0003677
Gso7g0602 676 MobiDBLite consensus disorder prediction 289 329 - -
Gso7g0602 676 MobiDBLite consensus disorder prediction 170 230 - -
Gso7g0602 676 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 50 675 - -
Gso7g0602 676 MobiDBLite consensus disorder prediction 303 329 - -
Gso7g0602 676 MobiDBLite consensus disorder prediction 432 460 - -
Gso7g0602 676 SUPERFAMILY ARID-like 46 122 IPR036431 GO:0003677
Gso7g0602 676 MobiDBLite consensus disorder prediction 428 466 - -
Gso7g0602 676 CDD ARID 27 114 - -
Gso7g0602 676 SMART bright_3 26 119 IPR001606 GO:0003677
Gso7g0602 676 SMART ARID_2 22 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0602 Gso-Chr7 6383807 6387874 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso7g0602 ARID 4.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0602 - - gmx:100779445 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0602 7 6383807 6387874 Gso16g0286 16 3242339 3246763 GST
Gso18g1957 18 52062649 52068839 Gso7g0602 7 6383807 6387874 PCT
Gso9g2125 9 45535859 45541940 Gso7g0602 7 6383807 6387874 PCT
Gso7g0602 7 6383807 6387874 Gso18g1957 18 52062649 52068839 PCT
Gso7g0602 7 6383807 6387874 Gso9g2125 9 45535859 45541940 PCT