Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0600 ATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACGCCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCATGAGTCTTTAACGTCTAATGATGGTACGGCTACGTCACTCACTACTGGATTGCTGGTAGGCTTGAACCTGGAAACTTCCACACCTGATACATACCATCCCCCTCCTGCACCTCTACCTTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGCAAAGATCCTGAAGAATCTGACTGTAAAATTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGGATTGTCAAAATCTAAAGAATTTCATGCATTAGTAACAGAAGAAGAGGACGGCTGTCCAATTTGTCTTGAAGAGTATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCATCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACATTGAACTAG 576 0.4236 MGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGTATSLTTGLLVGLNLETSTPDTYHPPPAPLPYDMVLGGPASTDSESGRETVSGSSFETLITCKDPEESDCKIKANSAPISPSKAGLSKSKEFHALVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0600 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 191 - -
Gso7g0600 191 Pfam Ring finger domain 140 180 IPR001841 -
Gso7g0600 191 SMART ring_2 140 180 IPR001841 -
Gso7g0600 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Gso7g0600 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 191 - -
Gso7g0600 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 187 IPR013083 -
Gso7g0600 191 SUPERFAMILY RING/U-box 131 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0600 Gso-Chr7 6359241 6363624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0600 1 191 C3H Transcription Factor Family AT4G00335 61.257 6.59e-81 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0600 - - gmx:100792561 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0600 7 6359241 6363624 Gso16g0284 16 3219121 3223552 GST
Gso18g1952 18 52023349 52027209 Gso7g0600 7 6359241 6363624 PCT
Gso9g2121 9 45494404 45498157 Gso7g0600 7 6359241 6363624 PCT
Gso7g0600 7 6359241 6363624 Gso18g1952 18 52023349 52027209 PCT
Gso7g0600 7 6359241 6363624 Gso9g2121 9 45494404 45498157 PCT