Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0578 ATGTCACTATACGACGCCGCTTTCGTCGACACAGAGCTCTCCAAACGCACTTCCATCTTCGGCCTCCGCCTCTGGGTCGTCATCGGCATCCTCGTCGGATCCCTCATCGTCATCACCCTCTTCCTCCTCTCCCTCTGCCTCACCTCCCGCCGCCGCCACCACCACCACCATCACAAGAACCCCCGCCCCCGCCACCCCTCCACCACCCTCCCCACTCCCCCAATCTCCAAAGAAATCCTCGAGATCGTCCACGTCCCCCCGCCCCCCGACACCGTCCACCTCCCCCCTCCGCCGCCGACAAAACCCGACCACCCTCGCTCCGCGGCGACGGCGGCGCTGTACTCGAGCGGGGAGAGCAGAGCAACCGCGAGTGCGTGCGAAACGGCGTCGTCGCTTGGAAGCGTGGGCCCCGAAGTGTCGCATCTCGGGTGGGGGAGGTGGTACACGCTCCGAGAACTCGAAGCCGCCACTAATGGGTTGTGCGAAGAGAACGTCATCGGCGAAGGTGGCTACGGAATCGTGTACCGTGGCTTGTTTCCCGATGGCACCAAGGTTGCTGTTAAGAACCTTTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTTGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCATACAGGATGCTTGTGTATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGTCCAATGACATGGGATATCCGAATGAACATTATATTGGGCACGGCAAAAGGATTGGCTTATCTTCATGAAGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGCCAGTGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAGTACGCGTGCACTGGAATGCTGACTGAAAAGAGTGATGTGTATAGTTTCGGGATACTTATCATGGAATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAAGGCTCTTAAACGGGCTTTGTTGGTTGCTCTTCGATGTGTCGACCCTGATGCAGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATGATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTAGAGCATAAGGACTCAAAATTAGATAAAAGGCAGATAGGTGGAGAGATCACTGATCAAAGTGAAGATGACAGTACTACTAGTAGTAGACTGCACCCTCAACCCCATAGATCGAGATAA 1488 0.5128 MSLYDAAFVDTELSKRTSIFGLRLWVVIGILVGSLIVITLFLLSLCLTSRRRHHHHHHKNPRPRHPSTTLPTPPISKEILEIVHVPPPPDTVHLPPPPPTKPDHPRSAATAALYSSGESRATASACETASSLGSVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYRGLFPDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPMTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNPKVSDFGLAKLLSADHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMELITGRSPVDYSKPQGEVNLIEWLKSMVGNRKSEEVVDPKIAEKPSSKALKRALLVALRCVDPDAAKRPKIGHVIHMLEAEDLLFRDDRRTGGESSRSHRDYQLEHKDSKLDKRQIGGEITDQSEDDSTTSSRLHPQPHRSR* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0578 495 CDD STKc_IRAK 166 432 - -
Gso7g0578 495 MobiDBLite consensus disorder prediction 442 486 - -
Gso7g0578 495 SMART serkin_6 160 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0578 495 MobiDBLite consensus disorder prediction 88 104 - -
Gso7g0578 495 SUPERFAMILY Protein kinase-like (PK-like) 137 432 IPR011009 -
Gso7g0578 495 MobiDBLite consensus disorder prediction 86 114 - -
Gso7g0578 495 MobiDBLite consensus disorder prediction 442 495 - -
Gso7g0578 495 ProSitePatterns Protein kinases ATP-binding region signature. 166 188 IPR017441 GO:0005524
Gso7g0578 495 Pfam Protein kinase domain 163 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0578 495 PANTHER OS01G0323000 PROTEIN 1 456 - -
Gso7g0578 495 Gene3D Transferase(Phosphotransferase) domain 1 236 444 - -
Gso7g0578 495 PANTHER BNACNNG08720D PROTEIN 1 456 - -
Gso7g0578 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Gso7g0578 495 Gene3D Phosphorylase Kinase; domain 1 140 235 - -
Gso7g0578 495 ProSiteProfiles Protein kinase domain profile. 160 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0578 495 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0578 Gso-Chr7 6131451 6134789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0578 26 432 Trihelix Transcription Factor Family AT5G38560 40.580 1.82e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso7g0578 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0578 - - gmx:100777348 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0578 7 6131451 6134789 Gso16g0266 16 3047437 3051577 GST
Gso19g2113 19 49684620 49688289 Gso7g0578 7 6131451 6134789 PCT
Gso3g2159 3 46846249 46849269 Gso7g0578 7 6131451 6134789 PCT
Gso18g1938 18 51812594 51816414 Gso7g0578 7 6131451 6134789 PCT
Gso9g2108 9 45382260 45386123 Gso7g0578 7 6131451 6134789 PCT
Gso7g0578 7 6131451 6134789 Gso18g1938 18 51812594 51816414 PCT
Gso7g0578 7 6131451 6134789 Gso9g2108 9 45382260 45386123 PCT