Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0553 ATGCAGCAGCTAATTACCCCCACCAACTTCCTTTGGCCCTCTCAAGAAAACATAACAACACTCACTCTAATTTCCCTCCCTTTTCCTTCCACAAATGGAGAATTCCCCATCTCATCCTTCCTCTTCTTCTCTTCAATGTCCTCCTTCAACCCCTTCTCTCCTCCTCCACCCACTGCCACCACCACCCCTTACCTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGCGTTCTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTTTGCTGCCGCACCCTCCGCCGCCGCAACAACAACAACAACCGCCGCCACACCCCCGATGGCGTCGTGCTCCCGCGCGTGATCTTCGTACCCGAGGACGAGGATGACGACGACGACGACACCCGCCAGAACGACGTCGCCACCGGCCTCGACCAGGCCGTCATAAACTCCTACCCCAAGTTTCCATTCGTTAAGGAAGGTAATTACGACAGCACATGCTCGATCTGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGTCGACACTACTTTCATCTCTGTTGTCTCGACCCATGGCTCAAGCTTAACGGGTCCTGCCCCGTTTGCCGGAACTCCCCCATGCCGACGCCGCTGTCCACGCCGCTGCAGGAGGTCGTGCCGCTCTCGCAGTACGCCGATGCCAGGGCGAGGAGGTGA 708 0.5777 MQQLITPTNFLWPSQENITTLTLISLPFPSTNGEFPISSFLFFSSMSSFNPFSPPPPTATTTPYLTNLGFGYSIAIALGVLFLLSTLILSSYLCCRTLRRRNNNNNRRHTPDGVVLPRVIFVPEDEDDDDDDTRQNDVATGLDQAVINSYPKFPFVKEGNYDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYADARARR* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0553 235 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Gso7g0553 235 PANTHER RING-H2 FINGER PROTEIN ATL67 59 235 - -
Gso7g0553 235 CDD RING-H2_PA-TM-RING 164 207 - -
Gso7g0553 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 212 IPR013083 -
Gso7g0553 235 SUPERFAMILY RING/U-box 146 211 - -
Gso7g0553 235 Pfam Ring finger domain 164 207 IPR001841 -
Gso7g0553 235 PANTHER RING-H2 FINGER PROTEIN ATL67 59 235 IPR044289 GO:0016567|GO:0016740
Gso7g0553 235 SMART ring_2 165 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0553 Gso-Chr7 5605876 5607125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0553 64 227 C3H Transcription Factor Family AT5G06490 37.912 4.06e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0553 - - gmx:100807783 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0553 7 5605876 5607125 Gso7g0553 7 5605876 5607125 ECH
Gso7g0553 7 5605876 5607125 Gso16g0252 16 2908503 2909661 GST
Gso18g1915 18 51571528 51572720 Gso7g0553 7 5605876 5607125 PCT
Gso9g2088 9 45197749 45198975 Gso7g0553 7 5605876 5607125 PCT