Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0502 ATGCCTACAAAGCTATTCTCCCAACTACGTCTTCTCCATCCCCTCCTCCCCATGAAGCCCCGCACTCTCCCCCTTCTCTCCAGACCCTTCTTCTTCCCTTCCTCCAAGTTCCTCCGAACCTCACCGTTTAAGGTTCGCGCCTTCTCCTCCCGGGAGAAGGTTCCCCTCCGCCCCTCCAAGAGCCTCATCGACGACGAGGCCGACCTCAGCAACTGGGTTGACGAATTGCGCTCCGGCGGGCCCGATGAAATGCGGTCTGGCCGGGGCAATGAAGTGCGGACCGGTCGGAGAGACCGGTTTGCCGATTCTGGCCGGTTCAGCCGCGATGACAGGGAACGCGAATTCCGGCCGCCGAGGAATAATAACCGGGCTTCCGCGTTGGGGAAGAGAAGGGGCGAGGATTTGAGGAAGGGGGGACAGAGTGTCGGTTCGAGGAGAAAGTTTCAACCGAGGAGTGATGATGATGATAACGAGGTAATGAATGGAAGAAAGTTGAAGGGTGGTGGCGTTGGAGCCTTTCCTAGCGAGGATGAGGATGAAGATGAAGACGAAGAGAGTGAAGGGAGTGAGGAGGAAGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGTTTTGAACCGGAGGAACACCGAACCAACTCCAAGACCTTCTTCTCCTGGAGGAGGATCTGATTCTTATTTGAGTGAAACCAGATTTGACCAATGTTCAATCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACGGTTGTTCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTGGCAAAGTCACCTCCAAGTGATCGTGATCATAGGCGGCCACCAATTGCTGTTCTTGTCATATGCCCAACTCGAGAACTTGCAAGCCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCGTTAGAGCAGAAACGAATGCAAGCAAACCCCTGCCAAATCCTTGTTGCCACACCTGGAAGGCTTAGAGATCATACTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCGGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGGTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGAACCGAGGAGACACATTCACAGGTCTGCCAGACGCATTTAGTTGCCCCATTGGACAAGCATTTCTCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTCCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTACAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACATAGACTCGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGACTTCTTTTTATCTACCGTAAAAGATTTGCCTATTGAGAAAGCTCCTGTAGTACCTTCAGTTGATCCTGACACCAAGAAAAAGGTGGAAAAAGCCCTATCCAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCCAACAAAAAAGTGGGGCGTGACAAGTACAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATACCTAAGCTAGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTGCAAAATAG 2112 0.4811 MPTKLFSQLRLLHPLLPMKPRTLPLLSRPFFFPSSKFLRTSPFKVRAFSSREKVPLRPSKSLIDDEADLSNWVDELRSGGPDEMRSGRGNEVRTGRRDRFADSGRFSRDDREREFRPPRNNNRASALGKRRGEDLRKGGQSVGSRRKFQPRSDDDDNEVMNGRKLKGGGVGAFPSEDEDEDEDEESEGSEEEEILNKSRTALFGQQNVLNRRNTEPTPRPSSPGGGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPSDRDHRRPPIAVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVCQTHLVAPLDKHFSLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTVKDLPIEKAPVVPSVDPDTKKKVEKALSNVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0502 703 MobiDBLite consensus disorder prediction 174 191 - -
Gso7g0502 703 Gene3D - 457 681 IPR027417 -
Gso7g0502 703 Pfam Helicase conserved C-terminal domain 482 587 IPR001650 -
Gso7g0502 703 SMART ultradead3 253 463 IPR014001 -
Gso7g0502 703 PANTHER RNA HELICASE 196 701 - -
Gso7g0502 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 602 IPR027417 -
Gso7g0502 703 CDD DEADc_MSS116 241 450 - -
Gso7g0502 703 SMART helicmild6 506 587 IPR001650 -
Gso7g0502 703 MobiDBLite consensus disorder prediction 78 232 - -
Gso7g0502 703 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 265 448 IPR014001 -
Gso7g0502 703 MobiDBLite consensus disorder prediction 199 232 - -
Gso7g0502 703 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 196 701 - -
Gso7g0502 703 CDD SF2_C_DEAD 465 596 - -
Gso7g0502 703 Gene3D - 184 449 IPR027417 -
Gso7g0502 703 MobiDBLite consensus disorder prediction 126 162 - -
Gso7g0502 703 Pfam DEAD/DEAH box helicase 259 436 IPR011545 GO:0003676|GO:0005524
Gso7g0502 703 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 234 262 IPR014014 GO:0003724
Gso7g0502 703 MobiDBLite consensus disorder prediction 78 119 - -
Gso7g0502 703 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 482 630 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0502 Gso-Chr7 5068807 5075017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0502 234 618 Eukaryotic Initiation Factors Gene Family AT3G19760 28.967 8.97e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0502 - - gmx:100795739 1307.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0502 7 5068807 5075017 Gso7g0502 7 5068807 5075017 ECH
Gso7g0502 7 5068807 5075017 Gso16g0211 16 2476150 2482148 GST