Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0498 ATGGGCATCTTGGAAGTCCTTTTTCCCTTCTTCGTCTTTCCTGTCATATATGCTGTTGCTACCTCAAATGATTGTCAATTTTCCGTATGTGGCAACAATAGTGTCCTTATTCGTTTCCCCTTTCAACTAGATGGTGATCGAAATCCTTATTGTGGCTATCCTGGTTTCAACTTAACTTGTACGAATAATAGCAAAACAGTGCTAAAACTTCCATACTCTGGTGCATTCTATGTGCGCAGCATCAACTACCTCACACAAAAGATACAAGTCTACGACCCTGATGATTGCCTCCCCAAACGTCTTTTGACCCTCAATGTCTCAGGTTCTCCTTTCATTCCCACTTTTACTCGTGACTACACCTTCTTAAGCTGCCCATTTCAGAACGCAGGGTCACAATTCATTCCCATAGACTGCCTCAGTAATTCCACAAATTTTGTATCAGCTGTCCCTACTCTAAACTTGACCAATCCATTGCCTGAGTCTTGCAATGTTATTACAAGGGTTTCAGTCCCAGTTTCAGGGCCAGAGCAACAATATGAGGAGAATCACAGAGATGAGCTTAGTGAAGATCTTCGATTAACTTGGGATAGACCTGACTGCAGATATTGTGAATCGGGACAGCAATTGTGTGGATTTGATCCAGATAACAACGGTCAACTCTTCTGTTTTCCTGGTTACCAAACAGTTACTTCAAGACGTGGAGCCCAAGTTTTCAGAATCATCACATTTTGCATTGCTGGACCAGCAGCAGTCATTGCAATAGTGATGGCATGCTGTGTGTGCTACAAGGACAGACTAACCAACAGGTCTGCACTTGCAGCTACAATATCGCCGGTGCCACAAATCGCAACCACGGGTCTCGACGAGTCCACGATCGAGTCCTACGAGAAGATGGTGGTCGGAGAGAGTCGACGAGTTCCTGGACCCAACAACAATGGATGCTGTTGGATATGCTTGTCGGAGTACAACAGCAAAGAGACAATAAGATTGATTCCTGAATGCAAACACTGCTTCCATGCAGACTGCATAGACGAGTGGCTTCGAATAAACACCACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCCTCTTCATGTTACGTCCATTGACCCCTAA 1119 0.4504 MGILEVLFPFFVFPVIYAVATSNDCQFSVCGNNSVLIRFPFQLDGDRNPYCGYPGFNLTCTNNSKTVLKLPYSGAFYVRSINYLTQKIQVYDPDDCLPKRLLTLNVSGSPFIPTFTRDYTFLSCPFQNAGSQFIPIDCLSNSTNFVSAVPTLNLTNPLPESCNVITRVSVPVSGPEQQYEENHRDELSEDLRLTWDRPDCRYCESGQQLCGFDPDNNGQLFCFPGYQTVTSRRGAQVFRIITFCIAGPAAVIAIVMACCVCYKDRLTNRSALAATISPVPQIATTGLDESTIESYEKMVVGESRRVPGPNNNGCCWICLSEYNSKETIRLIPECKHCFHADCIDEWLRINTTCPVCRNSPSPSPLHVTSIDP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0498 372 Pfam Wall-associated receptor kinase galacturonan-binding 25 92 IPR025287 GO:0030247
Gso7g0498 372 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
Gso7g0498 372 SMART ring_2 315 356 IPR001841 -
Gso7g0498 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 362 IPR013083 -
Gso7g0498 372 CDD RING-H2_EL5_like 315 357 - -
Gso7g0498 372 Pfam Wall-associated receptor kinase C-terminal 155 223 IPR032872 -
Gso7g0498 372 Pfam Ring finger domain 315 357 IPR001841 -
Gso7g0498 372 SUPERFAMILY RING/U-box 310 359 - -
Gso7g0498 372 SMART ringv_2 314 357 IPR011016 GO:0008270
Gso7g0498 372 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 367 - -
Gso7g0498 372 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0498 Gso-Chr7 5017959 5020956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0498 23 363 C3H Transcription Factor Family AT2G46495 43.553 9.40e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0498 - - gmx:100794143 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0498 7 5017959 5020956 Gso7g0498 7 5017959 5020956 ECH
Gso7g0498 7 5017959 5020956 Gso16g0206 16 2398568 2401269 GST
Gso19g2149 19 49993198 49995522 Gso7g0498 7 5017959 5020956 PCT
Gso7g0498 7 5017959 5020956 Gso19g2149 19 49993198 49995522 PCT